Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M18
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-16|CAB61089.1|  535|Caenorhabditis elegans Hypothetical...    36   0.009
U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna bindi...    30   0.75 
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi...    30   0.75 
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel...    28   3.0  
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell...    28   3.0  
AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine re...    28   3.0  
Z79755-2|CAB02107.1|  294|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>AL132949-16|CAB61089.1|  535|Caenorhabditis elegans Hypothetical
           protein Y53F4B.18 protein.
          Length = 535

 Score = 36.3 bits (80), Expect = 0.009
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +2

Query: 182 KREKSILLELIKYAFGGGARSLQALSFTLIHRTRLFMSSARTRHYCDRADRLGRAMLKSL 361
           K E +   E+ KY  G    +L  +   +I       S A T++   + DRL R + + L
Sbjct: 387 KGEVNCFTEIFKYMAGNSNHTLSGIVAGIIDSRDPPFSEAHTKNLLYKRDRLKRQVKELL 446

Query: 362 GENGVFLYP 388
           G +G+ L+P
Sbjct: 447 GTDGILLFP 455


>U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform a protein.
          Length = 868

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 241 LPSGAQLYPHTQDATVHVERADSSLLRPRGPTRARHAKKFGRERCFPIPR 390
           LPSG Q  P +       ERA +S+  P+ P + R +++    R +PI +
Sbjct: 585 LPSGTQPTPDSVWTKKAKERAAASVTVPKSPMQRRESEEQKMNRFYPISK 634


>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform b protein.
          Length = 1065

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 241 LPSGAQLYPHTQDATVHVERADSSLLRPRGPTRARHAKKFGRERCFPIPR 390
           LPSG Q  P +       ERA +S+  P+ P + R +++    R +PI +
Sbjct: 782 LPSGTQPTPDSVWTKKAKERAAASVTVPKSPMQRRESEEQKMNRFYPISK 831


>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical protein
            C27A7.4 protein.
          Length = 1403

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 41   AKYLEGKCGATLSEKKFEDLEDSVEMSIAAFFSMKDIPNMLQDPNDPKREKSI 199
            AKYLE +      E   E+ E +   +   F  +KD P  ++     KRE+S+
Sbjct: 848  AKYLEARRDQASIEAAIENYEKAGVHAFEVFRMLKDYPKQIEQYVRRKREESL 900


>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-related
            protein LIN-59 protein.
          Length = 1312

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 243  ERAPPPNAYFINSNNILFSRF 181
            E+ PP N Y IN+N+ +F+ F
Sbjct: 1220 EKVPPKNRYPINTNSYVFTEF 1240


>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
            lineage protein 59 protein.
          Length = 1312

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 243  ERAPPPNAYFINSNNILFSRF 181
            E+ PP N Y IN+N+ +F+ F
Sbjct: 1220 EKVPPKNRYPINTNSYVFTEF 1240


>AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine
           receptor, class sx protein7 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 216 FINSNNILFSRFGSFGSCSMLGMSF 142
           F+ S  ILF  FG+FG+C  + + F
Sbjct: 13  FVASFKILFFVFGTFGNCCFIALIF 37


>Z79755-2|CAB02107.1|  294|Caenorhabditis elegans Hypothetical
           protein F43G9.3 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 158 MLQDPNDPKREKSILLELIKYAFGGGARSLQALSFTLIHRTRLFMSSARTRHYCDRA 328
           M  D N+ K+  S++L L   A  G   +L   +   + RT+++   + TR Y  R+
Sbjct: 1   MPHDSNEGKQRPSVVLSLSAGAIAG---ALAKTTIAPLDRTKIYFQVSSTRGYSFRS 54


>Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical
           protein ZK1307.6 protein.
          Length = 702

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +2

Query: 23  DSVRAAAKYLEGKCGATLSEKKFEDLEDSVEMS--IAAFFSMKDIPNMLQDPNDPKREKS 196
           D  R++   L       + + + +D++  V+ S  + A FS+  + +    P      + 
Sbjct: 179 DDTRSSEAVLRALLRNEMLKDRIDDVKTQVQTSEEVIATFSLGPVVSAFPQPTQESGTRG 238

Query: 197 ILLELIKYAFGG 232
           I+ +L + A+GG
Sbjct: 239 IIPQLERNAYGG 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,452,355
Number of Sequences: 27780
Number of extensions: 146697
Number of successful extensions: 427
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)