Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M18
         (410 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39500.1 68417.m05586 cytochrome P450, putative simialrity to...    29   1.6  
At1g15480.1 68414.m01862 DNA-binding protein, putative similar t...    28   2.8  
At4g13720.1 68417.m02130 inosine triphosphate pyrophosphatase, p...    26   8.6  

>At4g39500.1 68417.m05586 cytochrome P450, putative simialrity to
           cytochrome P450 CYP86A1, Arabidopsis thaliana,
           EMBL:X90458
          Length = 469

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 32  RAAAKYLEGKCGATLSEKKFEDLE-DSVEMSIAAFFSMKDIPNMLQDPNDPKREKSILLE 208
           R  AKY+  K G  +  ++F D+     E  +++F  +      L +P+D K  +  +L 
Sbjct: 210 RVCAKYISDKRGEIIRSQRFSDISYGEPEDLLSSFMKLDTTKYNLLNPSDDKFLRDTILA 269

Query: 209 LI 214
            I
Sbjct: 270 FI 271


>At1g15480.1 68414.m01862 DNA-binding protein, putative similar to
           DNA-binding protein [Triticum aestivum] GI:6958202;
           contains Pfam profile PF01535: PPR repeat
          Length = 623

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 377 KHRSRPNF--LAWRARVGPRGRSSDESARST 291
           KH + P F  L+W +  G R  SSD  A++T
Sbjct: 75  KHEALPRFYELSWSSSTGRRSLSSDAGAKTT 105


>At4g13720.1 68417.m02130 inosine triphosphate pyrophosphatase,
           putative / HAM1 family protein contains Pfam profile
           PF01725: Ham1 family; similar to inosine triphosphate
           pyrophosphatase (GI:13398328) [Homo sapiens]
          Length = 206

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 71  TLSEKKFEDLEDSVEMSIAAFFSMK-DIPNMLQDPNDPKREKSILLEL 211
           T + KK E+++  +  SI  F S+K D+P +  +P D  +EK+ L  L
Sbjct: 20  TGNAKKLEEVKAIIGNSIP-FKSLKLDLPELQGEPEDISKEKARLAAL 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,016,894
Number of Sequences: 28952
Number of extensions: 137586
Number of successful extensions: 413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)