Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M17
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    27   0.87 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   1.5  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   2.0  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    25   4.7  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    24   8.1  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.1  

>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 397 LXWNPVLPRTWKRPPKETARQS*GPNYNPAPFSHLPSSF*KLPTPF 260
           L  + ++PRT ++  +   +Q+  P+ +  P   LPSS    PTPF
Sbjct: 242 LKQSTIIPRTPQKTVRSIVKQTSSPHSSKMPKHSLPSS----PTPF 283


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -2

Query: 412  YIQTPLXWNPVLPRTWKRPP 353
            Y  TP  W    PR W  PP
Sbjct: 1122 YASTPNNWEVWAPRVWSNPP 1141


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -2

Query: 376 PRTWKRPPKETARQS*GPNYNPAPFSHLPSS 284
           P     PP    R S  P+  PAP +H  SS
Sbjct: 738 PAVKHHPPPPPVRSSISPSMPPAPLTHANSS 768


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 309 HHFRTCHHHFKSYRHRSSDD 250
           HH    HHH   + H S DD
Sbjct: 295 HHEGHHHHHHHHHHHHSHDD 314


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 385 PVLPRTWKRPP 353
           PV P+TWKR P
Sbjct: 136 PVQPKTWKRQP 146


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -3

Query: 243 YKSLF---TLFRFKMKIPFLIKYKSENYFLITGENRFFFSVKLVLIILICNYY 94
           YKSL    T+  F +K+ FL K+   +  ++ GE+ FF   ++ L+  I N Y
Sbjct: 373 YKSLVDLKTIDSFSLKLLFL-KFMICSC-MVKGESNFFLDNRIFLLERIMNRY 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,447,362
Number of Sequences: 5004
Number of extensions: 26433
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)