Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_M17
(413 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D29954-1|BAA06224.1| 1507|Homo sapiens KIAA0056 protein. 31 2.0
BC098398-1|AAH98398.1| 1498|Homo sapiens non-SMC condensin II co... 31 2.0
BX537424-1|CAD97666.1| 1539|Homo sapiens hypothetical protein pr... 29 4.6
BC032227-1|AAH32227.1| 1205|Homo sapiens ZFYVE16 protein protein. 29 4.6
BC030808-1|AAH30808.1| 809|Homo sapiens ZFYVE16 protein protein. 29 4.6
AF434817-1|AAL30772.1| 1539|Homo sapiens endofin protein. 29 4.6
AB002303-1|BAA20764.2| 1547|Homo sapiens KIAA0305 protein. 29 4.6
AK128650-1|BAC87549.1| 1662|Homo sapiens protein ( Homo sapiens ... 29 8.1
AJ626861-1|CAF25188.1| 3628|Homo sapiens VPS13C-2B protein protein. 29 8.1
AJ626860-1|CAF25187.1| 3585|Homo sapiens VPS13C-1B protein protein. 29 8.1
AJ608771-1|CAE75583.1| 3753|Homo sapiens VPS13C-2A protein protein. 29 8.1
AJ608770-1|CAE75582.1| 3710|Homo sapiens VPS13C-1A protein protein. 29 8.1
>D29954-1|BAA06224.1| 1507|Homo sapiens KIAA0056 protein.
Length = 1507
Score = 30.7 bits (66), Expect = 2.0
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = -3
Query: 306 HFRTCHHHFKSYRHRSSDDKFYKS--LFTLFRFKMKIPFLIKYKSENYFL--ITGENRFF 139
HF C HF +Y +KF +S LF K K + K + L T E RF
Sbjct: 1064 HFIECIFHFNNYEKHEKYNKFPQSEREKRLFSLKGKSNKERRMKIYKFLLEHFTDEQRFN 1123
Query: 138 FSVKLVLIILIC 103
+ K+ L IL C
Sbjct: 1124 ITSKICLSILAC 1135
>BC098398-1|AAH98398.1| 1498|Homo sapiens non-SMC condensin II
complex, subunit D3 protein.
Length = 1498
Score = 30.7 bits (66), Expect = 2.0
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = -3
Query: 306 HFRTCHHHFKSYRHRSSDDKFYKS--LFTLFRFKMKIPFLIKYKSENYFL--ITGENRFF 139
HF C HF +Y +KF +S LF K K + K + L T E RF
Sbjct: 1055 HFIECIFHFNNYEKHEKYNKFPQSEREKRLFSLKGKSNKERRMKIYKFLLEHFTDEQRFN 1114
Query: 138 FSVKLVLIILIC 103
+ K+ L IL C
Sbjct: 1115 ITSKICLSILAC 1126
>BX537424-1|CAD97666.1| 1539|Homo sapiens hypothetical protein
protein.
Length = 1539
Score = 29.5 bits (63), Expect = 4.6
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 401 SVVXESC-SSTDVEEATERDRTSELRSELQSRTIFALAIIILKVTDTV 261
SV C SSTD + T R++ ++ SELQ+R I + + +KV T+
Sbjct: 168 SVSDTPCVSSTDHDSDTVREQQNDTSSELQNREIGGIKELGIKVDTTL 215
>BC032227-1|AAH32227.1| 1205|Homo sapiens ZFYVE16 protein protein.
Length = 1205
Score = 29.5 bits (63), Expect = 4.6
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 401 SVVXESC-SSTDVEEATERDRTSELRSELQSRTIFALAIIILKVTDTV 261
SV C SSTD + T R++ ++ SELQ+R I + + +KV T+
Sbjct: 168 SVSDTPCVSSTDHDSDTVREQQNDTSSELQNREIGGIKELGIKVDTTL 215
>BC030808-1|AAH30808.1| 809|Homo sapiens ZFYVE16 protein protein.
Length = 809
Score = 29.5 bits (63), Expect = 4.6
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 401 SVVXESC-SSTDVEEATERDRTSELRSELQSRTIFALAIIILKVTDTV 261
SV C SSTD + T R++ ++ SELQ+R I + + +KV T+
Sbjct: 168 SVSDTPCVSSTDHDSDTVREQQNDTSSELQNREIGGIKELGIKVDTTL 215
>AF434817-1|AAL30772.1| 1539|Homo sapiens endofin protein.
Length = 1539
Score = 29.5 bits (63), Expect = 4.6
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 401 SVVXESC-SSTDVEEATERDRTSELRSELQSRTIFALAIIILKVTDTV 261
SV C SSTD + T R++ ++ SELQ+R I + + +KV T+
Sbjct: 168 SVSDTPCVSSTDHDSDTVREQQNDTSSELQNREIGGIKELGIKVDTTL 215
>AB002303-1|BAA20764.2| 1547|Homo sapiens KIAA0305 protein.
Length = 1547
Score = 29.5 bits (63), Expect = 4.6
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 401 SVVXESC-SSTDVEEATERDRTSELRSELQSRTIFALAIIILKVTDTV 261
SV C SSTD + T R++ ++ SELQ+R I + + +KV T+
Sbjct: 176 SVSDTPCVSSTDHDSDTVREQQNDTSSELQNREIGGIKELGIKVDTTL 223
>AK128650-1|BAC87549.1| 1662|Homo sapiens protein ( Homo sapiens
cDNA FLJ46809 fis, clone TRACH3035451. ).
Length = 1662
Score = 28.7 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 362 EATERDRTSELRSELQSRTIFALAIIILKVTDTVQAM 252
+ATE ++ LRS LQ + F++A II K V+ +
Sbjct: 694 DATEGNKVITLRSPLQIKNHFSIAFIIYKFVKNVKLL 730
>AJ626861-1|CAF25188.1| 3628|Homo sapiens VPS13C-2B protein protein.
Length = 3628
Score = 28.7 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 362 EATERDRTSELRSELQSRTIFALAIIILKVTDTVQAM 252
+ATE ++ LRS LQ + F++A II K V+ +
Sbjct: 2531 DATEGNKVITLRSPLQIKNHFSIAFIIYKFVKNVKLL 2567
>AJ626860-1|CAF25187.1| 3585|Homo sapiens VPS13C-1B protein protein.
Length = 3585
Score = 28.7 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 362 EATERDRTSELRSELQSRTIFALAIIILKVTDTVQAM 252
+ATE ++ LRS LQ + F++A II K V+ +
Sbjct: 2488 DATEGNKVITLRSPLQIKNHFSIAFIIYKFVKNVKLL 2524
>AJ608771-1|CAE75583.1| 3753|Homo sapiens VPS13C-2A protein protein.
Length = 3753
Score = 28.7 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 362 EATERDRTSELRSELQSRTIFALAIIILKVTDTVQAM 252
+ATE ++ LRS LQ + F++A II K V+ +
Sbjct: 2531 DATEGNKVITLRSPLQIKNHFSIAFIIYKFVKNVKLL 2567
>AJ608770-1|CAE75582.1| 3710|Homo sapiens VPS13C-1A protein protein.
Length = 3710
Score = 28.7 bits (61), Expect = 8.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 362 EATERDRTSELRSELQSRTIFALAIIILKVTDTVQAM 252
+ATE ++ LRS LQ + F++A II K V+ +
Sbjct: 2488 DATEGNKVITLRSPLQIKNHFSIAFIIYKFVKNVKLL 2524
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,355,060
Number of Sequences: 237096
Number of extensions: 887911
Number of successful extensions: 1784
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1783
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3087725076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -