Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M17
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74041-1|CAA98520.1|  255|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AF098997-3|AAC68713.1|  348|Caenorhabditis elegans Serpentine re...    26   9.4  

>Z74041-1|CAA98520.1|  255|Caenorhabditis elegans Hypothetical
           protein T03F7.5 protein.
          Length = 255

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -3

Query: 246 FYKSLFTLFRFKMKIPFLIKYKSENYFLITGENRFFFSVKLVLIILICNYY 94
           +Y    +  ++K  +      +  N   +  +N FF  + LVLI+ + N+Y
Sbjct: 121 YYAKRISSSKYKANVTTYSLKRKHNVSNVLNKNNFFMILILVLILQLYNFY 171


>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
           protein F59A6.5 protein.
          Length = 1286

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 389 ESCSSTDVEEATERDRTSELRSELQSR 309
           E+C   + E AT+ D+  +L  ELQ +
Sbjct: 613 ETCERLERESATKEDKLDKLEEELQEK 639


>AF098997-3|AAC68713.1|  348|Caenorhabditis elegans Serpentine
           receptor, class h protein71 protein.
          Length = 348

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 177 ENYFLITGENRFFFSVKLVLIILICNYYYYFNS 79
           E Y L+   + +FF    +L    C+ YY F S
Sbjct: 210 ETYMLMARRSIYFFRTLKILFFSSCSIYYLFIS 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,013,763
Number of Sequences: 27780
Number of extensions: 151892
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)