Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M17
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   5.5  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   7.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   7.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 309 HHFRTCHHHFKS 274
           HH +  HHH +S
Sbjct: 142 HHLQNHHHHLQS 153


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 391 WNPVLPRTWKRPPKETARQS*GPNYNP 311
           WN V+    +    +T     GP+Y+P
Sbjct: 531 WNCVIQYNTRAENHQTGTAKMGPSYDP 557


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 5/31 (16%), Positives = 18/31 (58%)
 Frame = -3

Query: 291 HHHFKSYRHRSSDDKFYKSLFTLFRFKMKIP 199
           ++++K+Y +  +  K Y ++  + +  + +P
Sbjct: 308 NYNYKNYNNNYNSKKLYYNIINIEQIPVPVP 338


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 5/31 (16%), Positives = 18/31 (58%)
 Frame = -3

Query: 291 HHHFKSYRHRSSDDKFYKSLFTLFRFKMKIP 199
           ++++K+Y +  +  K Y ++  + +  + +P
Sbjct: 319 NYNYKNYNNNYNSKKLYYNIINIEQIPVPVP 349


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 370  TWKRPPKE 347
            TWK PP+E
Sbjct: 996  TWKPPPRE 1003


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,895
Number of Sequences: 438
Number of extensions: 2504
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)