Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M17
         (413 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05310.1 68414.m00538 pectinesterase family protein contains ...    29   1.6  
At5g13810.1 68418.m01613 glutaredoxin family protein                   27   3.8  
At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to c...    27   5.0  
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c...    27   5.0  
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc...    27   6.6  

>At1g05310.1 68414.m00538 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 393

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 309 HHFRTCHHHFKSYRHRSSDDK 247
           HH    HHH   +RH+ SD K
Sbjct: 47  HHHHHHHHHHHHHRHKPSDTK 67


>At5g13810.1 68418.m01613 glutaredoxin family protein
          Length = 274

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -2

Query: 385 PVLPRTWKRPPKETARQS*GPNYNPAPFSHLPSSF*KLPTPFKR*QVLQIVIYFISFQ 212
           PV P   + P K+ + +S  P    +PFS L +S  +LP    R     IV+YF S +
Sbjct: 85  PVKPALAEIPQKQKSGKSLLPESRISPFSSLNNSVIRLPGTEDR-----IVVYFTSLR 137


>At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 427

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 306 HFRTCHHHFKSYRHRSSDDKFYKSLFTLFRFKMKIP 199
           H    H  F ++ HR  +  +Y S F   R   K+P
Sbjct: 372 HHNNHHEGFMNFMHRDEEINYYPSKFDPVRCAEKVP 407


>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 492

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 306 HFRTCHHHFKSYRHRSSDDKFYKSLFTLFRFKMKIP 199
           H    H  F ++ HR  +  +Y S F   R   K+P
Sbjct: 372 HHNNHHEGFMNFMHRDEEINYYPSKFDPVRCAEKVP 407


>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
           polycomb-group protein identical to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 902

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 407 SDSVVXESCSSTDVEEATERDRTSELRSELQS 312
           SDS+   SCS +D +     D TS  +  ++S
Sbjct: 438 SDSIASGSCSPSDAKHKDNEDATSSSQKHVKS 469


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,297,346
Number of Sequences: 28952
Number of extensions: 133945
Number of successful extensions: 336
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)