Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_M15
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 41 1e-04
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 38 0.001
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 37 0.003
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 33 0.025
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 3.8
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 26 3.8
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 26 5.0
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 25 6.6
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.6
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 41.1 bits (92), Expect = 1e-04
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Frame = +2
Query: 86 MEKRLVLELRGRNPSQVKELNLDNCRSTNIVGLSDQYTNLEILSLNNAGLTNLKGFPALP 265
+E RL N ++ L++ + ++ GLS +L L +++ L +L G L
Sbjct: 654 VENRLSSLTSFSNLLNLQYLDISYNQLEDLTGLSS-LIHLRELKVDSNHLWSLDGIQHLD 712
Query: 266 KLRKLELSDNRISNGLNFL-SGCKKLTHLNLSGNKIKALEELKPLKEFENLKNLDLFNNE 442
L KL +NRI L+F S +L L L N+I+ +EE+ L +NL L L NN+
Sbjct: 713 GLLKLSACNNRIKE-LSFTNSNLHRLEELLLGNNEIEEIEEISSL---QNLMVLQLDNNK 768
Query: 443 VT 448
+T
Sbjct: 769 LT 770
Score = 27.1 bits (57), Expect = 2.2
Identities = 28/121 (23%), Positives = 52/121 (42%)
Frame = +2
Query: 134 VKELNLDNCRSTNIVGLSDQYTNLEILSLNNAGLTNLKGFPALPKLRKLELSDNRISNGL 313
++EL L+ + G T ++ ++ N L++L F L L+ L++S N++ +
Sbjct: 628 IEELTLEGNEIAYLTGCP--VTIRDLNAVENR-LSSLTSFSNLLNLQYLDISYNQLED-- 682
Query: 314 NFLSGCKKLTHLNLSGNKIKALEELKPLKEFENLKNLDLFNNEVTIIEDYRSKVFALQPS 493
L+G L HL L L ++ + L L NN + + S + L+
Sbjct: 683 --LTGLSSLIHLRELKVDSNHLWSLDGIQHLDGLLKLSACNNRIKELSFTNSNLHRLEEL 740
Query: 494 L 496
L
Sbjct: 741 L 741
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 37.9 bits (84), Expect = 0.001
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 20/132 (15%)
Frame = +2
Query: 125 PSQVKELNLDNCRSTNIVGLS-DQYTNLEILSLNNAGLTNLKGFPALPKLRKLELSDNRI 301
P V + L R ++ L +++ NL+ L L + ++ P L +L+L DN I
Sbjct: 37 PDDVDCVELIQSRIQSMASLGLERFKNLQSLCLRQNQIKKIESVPET--LTELDLYDNLI 94
Query: 302 SNGLNFLSGCKKLTHLNLSGNKIKALEELKPLKEFENL-------------------KNL 424
N L K LT+L+LS N IK + + LK ENL NL
Sbjct: 95 VRIEN-LDNVKNLTYLDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNL 153
Query: 425 DLFNNEVTIIED 460
+L N++ +IE+
Sbjct: 154 ELGGNKIRVIEN 165
Score = 37.5 bits (83), Expect = 0.002
Identities = 27/86 (31%), Positives = 40/86 (46%)
Frame = +2
Query: 188 DQYTNLEILSLNNAGLTNLKGFPALPKLRKLELSDNRISNGLNFLSGCKKLTHLNLSGNK 367
D NLE L + +T + F L KL L + NRI+ N L L +S N
Sbjct: 167 DTLVNLEKLWVGKNKITKFENFEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHNG 226
Query: 368 IKALEELKPLKEFENLKNLDLFNNEV 445
+ + ++ L ENL+ LD+ NN +
Sbjct: 227 LTSFSGIEVL---ENLEILDVSNNMI 249
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 36.7 bits (81), Expect = 0.003
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Frame = +2
Query: 86 MEKRLVLELRGRNPSQVKELNLDNCRSTNI---VGLSDQYTNLEILSLNNAGLTNLK-GF 253
MEK +L + SQ+ L +C+ +I V LS Q +L L L+ LT +
Sbjct: 320 MEKDAILS--SSSWSQLLYLRCSSCKLKSIPKNVFLSLQ--SLVSLDLSGNELTEIPYAL 375
Query: 254 PALPKLRKLELSDNRISNGLNFLSGCKKLTHLNLSGNKIKALEE-----LKPLKEFENLK 418
LP+L L L+ N+I+ GC+ H++LS +I L L L+ +L+
Sbjct: 376 GELPQLCSLNLASNKIT-------GCRTFYHISLSHLQILVLSRNHLTSLSGLENVPSLE 428
Query: 419 NLDLFNNEVTIIEDYRSKV 475
LD+ +N +T + ++R V
Sbjct: 429 KLDIRDNSITDVVEFRRLV 447
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 33.5 bits (73), Expect = 0.025
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +2
Query: 203 LEILSL-NNAGLTNLKGFPA--LPKLRKLELSDNRISNGLNF-LSGCKKLTHLNLSGNKI 370
L+ LSL NN L + G+ + L LS +++ + KLT L++S N I
Sbjct: 243 LQTLSLANNLNLYSADGYAVDVFQGINNLNLSSTSLADVAELPVHTLHKLTFLDISENNI 302
Query: 371 KALEELKPLKEFENLKNL 424
+ + L L+ ENLK+L
Sbjct: 303 RDIRSLDHLRTLENLKHL 320
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 200 NLEILSLNNAGLTNLKGFPALPKLRKLELSDNRIS 304
NLE + L+ +TN+ PKL + ++ N +S
Sbjct: 596 NLETIDLSYNAITNIASLSECPKLNSINVACNLLS 630
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 480 LYNHH*NIWMDLIKKIEKLTTVMPEEEDEMN 572
+YN N ++ K+IE+L+ ++ E DE+N
Sbjct: 102 IYNTKKNEAKNMYKEIERLSVILGESVDEVN 132
>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
Spo14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 293 NRISNGLNFLSGCKKLTHLNLSGNKIKALEELKPLK--EFEN 412
N + G+N K + HL L G K K EE L+ +F+N
Sbjct: 80 NELIAGINNTIDGKLIDHLRLYGRKDKLFEEKNALRLTDFDN 121
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 6.6
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Frame = +2
Query: 80 TEMEKRLVLELRGRNPSQVKELNLDNCRS--TNIVG-LSDQYTNLEILSLNNAGLTNLKG 250
T + + L+ +L +N + V +N N S NI+ +SD NL+ L++ N GL G
Sbjct: 105 TRISEPLIGKLLYQNLNLVT-INFSNIFSLPANILEYISDNCPNLKALNIGNCGLVEDTG 163
Query: 251 FPAL----PKLRKLELSDNR--ISNGLNFLSGCKKLTHLNLSG 361
+ P L +L + + R L LS + L L++SG
Sbjct: 164 MVQIIKRCPYLNRLIIPNCRKLTDVSLQILSEKEDLIELDISG 206
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 25.4 bits (53), Expect = 6.6
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 164 STNIVGLSDQYTNLEILSLNNAGLTNLKGFPALPKLRKLELSDNRISNGLNFLSGCKKLT 343
S N +G +D Y +L A L K F R+ LSD++ + ++ L KKL+
Sbjct: 811 SENDIGGTDIYP----FALQGAALAAAKDFSR----REASLSDSQSAASMDMLPMKKKLS 862
Query: 344 HLNLSGNK-IKAL 379
H + S + IK+L
Sbjct: 863 HSSASSTRSIKSL 875
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,230
Number of Sequences: 5004
Number of extensions: 43748
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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