Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M14
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   4.3  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    26   4.3  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    25   5.7  
SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|...    25   7.5  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   7.5  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.5  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    25   10.0 
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    25   10.0 
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   10.0 
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   10.0 
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   10.0 
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    25   10.0 

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 246 WMWNSFFYRSSNNGMCT 196
           WMWNSF   S  NG  T
Sbjct: 421 WMWNSFRGASDENGEVT 437


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 122 RRRMCV*ESIIQQTMVRTA*KVPKTVHIP 208
           R+  CV ESI    ++ T  K+P T H+P
Sbjct: 31  RKSRCVVESIGNPCLLCTQLKIPCTYHLP 59


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 280 DIALIRLMVTAPYTDFVRPICLPSLDYTQQPPADFEMYVAGW 405
           D   + +       +FV P CL  + +T+     F ++VA W
Sbjct: 43  DCVFLEISELREIIEFVGPDCLRGIYFTEPISQCFVLHVANW 84


>SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +1

Query: 334 PICLPSLDYTQQPPADFEMYVAGWGMYKQF--ISGTGLSSTVKQHVKLPYVDR 486
           P C  S  YT Q   +  +    WG+ + F    G      V + VK P V++
Sbjct: 58  PPCTFSRSYTDQKRKEIHLGSTEWGLKESFTLTRGPNRRGNVGKGVKRPMVNK 110


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 311 HRIQILYG-PSVYRLWIIRNNPRQILKCTSPVGECTSSSYLALVCRVQLNNTL 466
           H   +L G P V +   +RN   Q+L    P    TS   L+LV  V +N TL
Sbjct: 198 HEAVLLSGNPMVAQKRYLRNWTTQVLSIILPNYYETSPLVLSLVTEVIINTTL 250


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 261 VGDVIWMWNSFFYRSSNNGMCTVFGTFHAVRTIVCCIILS*THILRRSFNQ----DCSSD 94
           +G  +  WN ++Y+  +N    +FG    ++     +I+  T +   S  +    + SSD
Sbjct: 253 LGFFVVFWNPYWYKMMDNPSWELFGRDQYIQCQALYLIIRLTCLYLLSCYESEILNLSSD 312

Query: 93  TVCSSEHVLR 64
           T   S+ +LR
Sbjct: 313 TNLESDFLLR 322


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 330 YKICIRCCYHQPNKRNVMSALHIVGDVIWMWNSFFY 223
           Y I  RC   +   + +  +  IVG   W+W+S F+
Sbjct: 124 YHIMRRCIPDEHPAKRLCLSWAIVGMNAWVWSSVFH 159


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 188 VPFM-QSGPLFVVLYSPKRTFFGVPSI 111
           VP++ + G  F VLYSP+ T    P++
Sbjct: 239 VPYLTEIGQSFAVLYSPELTSLNFPNL 265


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 423  ELLVHSPTGDVHFKICRGL 367
            ELL+    G+ H+ +CRGL
Sbjct: 1701 ELLLRMEDGNYHWHLCRGL 1719


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 279 MSALHIVGDVIWMWNSFFY 223
           M A  +V D  W W  FF+
Sbjct: 259 MDAHRVVRDYAWYWGDFFF 277


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -3

Query: 74  TYFELMS-EPPHSSIHMIKTLI 12
           T +EL + EPP+S IH +K L+
Sbjct: 191 TAYELATGEPPYSGIHPMKVLL 212


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 123 RSFNQDCSSDTVCSSEHVLRT 61
           RSF Q CS++ +CS+E   R+
Sbjct: 472 RSFFQKCSAEFLCSNEPNFRS 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,971
Number of Sequences: 5004
Number of extensions: 60020
Number of successful extensions: 168
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)