Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_M14
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0345 - 3811057-3811236,3811342-3811615,3811732-3812289,381... 32 0.36
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581... 29 1.9
05_03_0487 + 14629678-14629789,14637563-14637687,14637898-146379... 29 2.5
12_02_1157 + 26565040-26565081,26565189-26565262,26565343-265654... 28 5.8
05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462... 28 5.8
03_05_0885 - 28505628-28505767,28505892-28505970,28506048-285061... 28 5.8
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 28 5.8
07_01_0344 - 2490700-2493249 27 7.7
03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760 27 7.7
>10_01_0345 -
3811057-3811236,3811342-3811615,3811732-3812289,
3812602-3812747,3812930-3813097,3813896-3814003,
3814859-3815029,3816557-3816949,3817522-3817617,
3817715-3817774,3818600-3818744,3819296-3819520,
3820106-3820254
Length = 890
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 40 LCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRLGEYNTTNNGPDCMK 183
+C + +Y + A C L+E P+ + G+Y +T PDC K
Sbjct: 416 VCSQLFTTHQYTFSIACCFCNDYLLETRPERLGQGQYKSTLVCPDCKK 463
>06_01_0778 +
5816588-5816885,5817554-5817615,5818764-5818905,
5819969-5820064,5820147-5820266,5820401-5820663,
5821507-5821617
Length = 363
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +3
Query: 24 DHMNAAMRW-LTHQFEVRAHCCTLC 95
D+ AA+RW LTH E A CC C
Sbjct: 260 DYGGAAVRWGLTHHKESAADCCQAC 284
>05_03_0487 +
14629678-14629789,14637563-14637687,14637898-14637987,
14638267-14638319,14638616-14638718,14639057-14639131,
14639479-14639583
Length = 220
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 557 HSCSLVITSASPPRNVLCAA*HLSLSTYGSLTCCLTVLD 441
H C++ TS++ N C A ++S ST LTC + +D
Sbjct: 166 HFCTISATSSAV--NSFCIAANMSFSTTSELTCSMCFMD 202
>12_02_1157 +
26565040-26565081,26565189-26565262,26565343-26565460,
26565547-26565617,26565704-26565869,26565946-26566145,
26566669-26566880,26567404-26567522,26567952-26568053,
26568144-26568253,26568340-26568427,26568574-26568606,
26568635-26568834,26568916-26569120
Length = 579
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 455 LTVLDKPVPDMN-CLYIPQPATYISKS 378
+ VL PVP N CL+IP+ A Y SK+
Sbjct: 416 IPVLYSPVPFQNGCLHIPEVALYNSKA 442
>05_01_0536 -
4622767-4622865,4623550-4623673,4624571-4624685,
4624784-4625028,4625081-4625316
Length = 272
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -2
Query: 264 IVGDVIWMWNSFFYRSSNNGMCTVFGTFHAVRTIVCCIILS*THILRRSFNQDCSSDTVC 85
+VGDV W ++ F +S G C FG+F + ++ + LR +QD ++
Sbjct: 192 LVGDVPWKYSKFLEINSIPGSCH-FGSFCCIFALIISRLNKPFLFLRTDKHQDLLDESQI 250
Query: 84 SS 79
S+
Sbjct: 251 SA 252
>03_05_0885 -
28505628-28505767,28505892-28505970,28506048-28506163,
28506588-28506654,28507361-28507456,28508729-28508838,
28508983-28509070,28510109-28510183,28510401-28510445,
28510521-28510595,28511392-28511763
Length = 420
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +2
Query: 317 IQILYGPSVYRLWIIRNNPRQILKCTSPVGECTSSSYLALVCRVQLNNTLNSHMLIETDV 496
I+++ P+ + +++ + C + +GE TS +YL + + L+SH +I D+
Sbjct: 205 IEVIDDPNADKFYMVLEYVEGKMVCDNGLGEATSRNYLRDIISGVM--YLHSHNIIHGDI 262
Query: 497 K 499
K
Sbjct: 263 K 263
>02_01_0451 -
3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 187 TKDCAHPVVTAPIEKTIPHPDYIPNDVQGRHDIALI 294
TK C V TAPI KTI + Y D G+ D+ L+
Sbjct: 427 TKHCTRAVYTAPI-KTISNQKY--RDFCGKFDVGLL 459
>07_01_0344 - 2490700-2493249
Length = 849
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +2
Query: 395 SPVGECTSSSYLALVCRVQLNNTLNSHMLIETDV-----KQRKGHCVGA 526
S +G C + + LV N TL SH L TD+ KQR C+GA
Sbjct: 575 SLIGYCDEQNEMILVYEHMANGTLRSH-LYGTDLPALTWKQRLEICIGA 622
>03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760
Length = 184
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/72 (23%), Positives = 28/72 (38%)
Frame = -3
Query: 239 GIVFSIGAVTTGCAQSLVPFMQSGPLFVVLYSPKRTFFGVPSIKIAPVTQCAAVSTYFEL 60
G + ++ A T + +P L + Y + VPS I C V F
Sbjct: 58 GSITTVIATTVYLVWAYMPERCLRSLGITYYPSRYWALAVPSFVIVATALCMVVYVGFNF 117
Query: 59 MSEPPHSSIHMI 24
++ PP +S + I
Sbjct: 118 LATPPPTSFNTI 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,422,674
Number of Sequences: 37544
Number of extensions: 406204
Number of successful extensions: 1015
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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