Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M14
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33380.1 68417.m04745 expressed protein                             29   1.6  
At1g28520.1 68414.m03506 expressed protein                             29   2.1  
At5g59700.1 68418.m07484 protein kinase, putative similar to rec...    28   3.7  
At1g05370.1 68414.m00544 expressed protein                             28   3.7  
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila...    28   4.9  
At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putati...    27   6.4  

>At4g33380.1 68417.m04745 expressed protein
          Length = 328

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 24  DHMNAAMRW-LTHQFEVRAHCCTLC 95
           D+  AA+RW LTH  E  A CC  C
Sbjct: 225 DYGGAAVRWGLTHHKESAADCCQAC 249


>At1g28520.1 68414.m03506 expressed protein
          Length = 486

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 100 GAILIEGTPKNVRLGEYNTTNNGPDCMKGTKDCAHPVVTAPIEKTI 237
           G +  E  P+N      NTTNN   C+KG    +  V T  ++ T+
Sbjct: 419 GRLTAEFPPEN---NTTNTTNNNKRCIKGRPKVSTKVATGNVQNTV 461


>At5g59700.1 68418.m07484 protein kinase, putative similar to
           receptor-like protein kinase [Catharanthus roseus]
           gi|1644291|emb|CAA97692
          Length = 829

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 395 SPVGECTSSSYLALVCRVQLNNTLNSHM----LIETDVKQRKGHCVGA 526
           S +G C  ++ + LV     N TL SH+    L+    KQR   C+G+
Sbjct: 540 SLIGYCDENNEMILVYEYMENGTLKSHLYGSGLLSLSWKQRLEICIGS 587


>At1g05370.1 68414.m00544 expressed protein
          Length = 439

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 383 LKCTSPVGECTSSSYLALVCRVQLNNTLNSHMLIETDVKQRK-GHCVGA 526
           LK T  +G C SS +   V R  L +T+    L  TD    K GH  GA
Sbjct: 264 LKSTDKIGSCASSRFAFTVSRDGL-DTVKPWCLTLTDTSSTKLGHNTGA 311


>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar
           to SP|P35207 Antiviral protein SKI2 {Saccharomyces
           cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 1347

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 187 TKDCAHPVVTAPIEKTIPHPDYIPNDVQGRHDIALI 294
           TK C   V TAPI KTI +  Y   D  G+ D+ L+
Sbjct: 391 TKHCTRAVYTAPI-KTISNQKY--RDFCGKFDVGLL 423


>At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650207]
           [PMID: 11247608] Contains Pfam domain PF00432:
           Prenyltransferase and squalene oxidase repeat
          Length = 758

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 291 KRNVMSALHIVGDVIWMWNSFFYRSSNNGMCTVFGTFHAVRTIV 160
           KR +  A   + D+  +  S++    N G+C ++GTF AVR +V
Sbjct: 586 KRFITKAAKYIEDMQTVDGSWY---GNWGVCFIYGTFFAVRGLV 626


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,746,295
Number of Sequences: 28952
Number of extensions: 320511
Number of successful extensions: 791
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)