Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M13
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...   105   7e-24
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    30   0.30 
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    27   2.8  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    26   3.7  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   3.7  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.7  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    26   5.0  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    26   5.0  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   6.5  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   6.5  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   8.7  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   8.7  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   8.7  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score =  105 bits (251), Expect = 7e-24
 Identities = 80/237 (33%), Positives = 102/237 (43%), Gaps = 35/237 (14%)
 Frame = +3

Query: 3   LVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 182
           LVVQ+ V  E+ ++CGG YLK+        +M     Y IMFGPD CG   + VH IF +
Sbjct: 118 LVVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMSNSIDYRIMFGPDKCGVNDR-VHFIFKH 175

Query: 183 KG-------KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADW--D 335
           K        + HL  +         T+LYTLIVKPD T+EV I+ + V  G L  D+   
Sbjct: 176 KNPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPDQTFEVRINGDVVRQGSLFYDFIPP 235

Query: 336 FLPPKKIKDPE-----------------AKKPEDWXXXXXXXXXXXXXXX----XXXXXX 452
            LPP +I DPE                 A KP+DW                         
Sbjct: 236 VLPPVEIYDPEDIKPADWVDEPEIPDPNAVKPDDWDEDAPRMIPDPDAVKPEDWLEDEPL 295

Query: 453 HIPDPDASKPXXXXXXXXXXXXPTMIDNPDYK-----GVWAPKQIDDPAYKGPWIHP 608
           +IPDP+A KP            P+ I NP        G W P  I +P Y+GPW  P
Sbjct: 296 YIPDPEAQKPEDWDDEEDGDWIPSEIINPKCIEGAGCGEWKPPMIRNPNYRGPWSPP 352



 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
 Frame = +3

Query: 327 DWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXH-----IPDPDASKPXXX 491
           DWD   P+ I DP+A KPEDW                           IP  +   P   
Sbjct: 269 DWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEAQKPEDWDDEEDGDWIPS-EIINPKCI 327

Query: 492 XXXXXXXXXPTMIDNPDYKGVWAPKQIDDPAYKGPW 599
                    P MI NP+Y+G W+P  I +P + G W
Sbjct: 328 EGAGCGEWKPPMIRNPNYRGPWSPPMIPNPEFIGEW 363



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 25/87 (28%), Positives = 32/87 (36%)
 Frame = +3

Query: 327 DWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDPDASKPXXXXXXXX 506
           DW    P  I DPEA+KPEDW                          +   P        
Sbjct: 288 DWLEDEPLYIPDPEAQKPEDWDDEEDGDWIPSEIINPKCIEG-AGCGEWKPPMIRNPNYR 346

Query: 507 XXXXPTMIDNPDYKGVWAPKQIDDPAY 587
               P MI NP++ G W P++I +P Y
Sbjct: 347 GPWSPPMIPNPEFIGEWYPRKIPNPDY 373


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 177 SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELE-ADWDFLPPKK 353
           S + K H  KK    +D  Y+H+Y +   P +   + +  ++ ES + E  + D+LP   
Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPESLKKENNNSDYLPKSA 196

Query: 354 IKDPEAKKPED 386
           +K  +   P+D
Sbjct: 197 MKQKKG-GPKD 206


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 225 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPED 386
           D +Y  L +L+ +  N+YE  +    + + +    W FL      D E KK ++
Sbjct: 753 DIIYERLVSLLSRVPNSYEDTLKFSAINTLQSLLFWFFLRKDNPADEEKKKDDE 806


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +3

Query: 60  LKVFDCRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYT 239
           +K+F   + +K  +  +P+E+M  P +  P             K H  + ++R  +DV T
Sbjct: 154 VKMFTQIIIEKYFNPASPHEVMLPPQLVQP---------ILDCKEHQRQDELRLFEDVET 204

Query: 240 HLYTLIVKP 266
           +L   ++KP
Sbjct: 205 YLLNFLLKP 213


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +3

Query: 189  KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPE 368
            KNH ++     K+ V      L +  DN Y+ ++ + K +   L+ D    P   +K  +
Sbjct: 995  KNHALRIGNEFKEKVNERYSKLEIDIDNVYQRMLLHAKKKYAALQLDSQGKPNLDVKGLD 1054

Query: 369  AKKPE 383
             K+ E
Sbjct: 1055 MKRRE 1059


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 306 ESGELEADWDFLPPKKIKDPEAKKPEDW 389
           E   L+     LP  + K P AKKPED+
Sbjct: 157 EKNTLDLKHCLLPSPEYKAPPAKKPEDY 184


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
 Frame = +3

Query: 48  GGGYLKVFDCRLDQKDMHGETPYEIMFGPDICGPGTK----KVHVIFSYKGKNHLIKKDI 215
           G  +LKV +   +   M  ETP +I++   +   G+      +H     K +    KK++
Sbjct: 614 GKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHFPLHAYLEAKERQEFTKKNL 673

Query: 216 R--CKDDVYTHLYTLIVKPDNTYEVLIDN-EKVESGEL 320
              CK+D +  LY+     D   E L+++ E+V S EL
Sbjct: 674 LLFCKEDEF--LYS-----DQENEDLLESFERVISEEL 704


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 327 DWDFLPPKKIKDPEAKKPEDW 389
           DWD +P ++ K  EA KP DW
Sbjct: 209 DWDDVPWRE-KPLEAMKPRDW 228


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -1

Query: 170  HVNLLCTRTTDIRPKHNLVGCLAMHVLLVQSTVEYLQVTASAVDVLFVL 24
            H ++    T + +P H LV  +       +  +   QVT S + VLF +
Sbjct: 1908 HPDISLNMTPNFKPSHELVQLINSSPFYRKHIISVHQVTRSDLHVLFAI 1956


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 331 GTSYLRRRSRIQKQRNLKIGTTNPQS 408
           GTS  RRR R++K+  +KI   + +S
Sbjct: 340 GTSQFRRRERVKKRHVIKIHEASNKS 365


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 321 EADWDFLPPKKIKD 362
           E+ +D+LPPKK+ D
Sbjct: 179 ESAYDYLPPKKVSD 192


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 195 HLIKKDIRCKDDVYTHLYTLI--VKPDNTYEVLIDNEKVESGE 317
           HL      C   + T+L+ L   V P   YE L++ EK+E  E
Sbjct: 840 HLTSDLFACTSVLKTYLHRLPEPVIPGTQYEELLEAEKIEKEE 882


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 195 HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVE 308
           H I + +  +++ + HL TL  KPD+   ++ID E +E
Sbjct: 686 HTINQ-LSSREEAHNHLLTLRNKPDSC--LIIDGESME 720


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,267
Number of Sequences: 5004
Number of extensions: 52263
Number of successful extensions: 163
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)