Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_M13
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 225 3e-59
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 219 1e-57
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 216 1e-56
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 209 1e-54
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 109 2e-24
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 89 3e-18
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857... 29 2.9
07_01_0117 + 894314-896677 28 6.7
01_05_0428 + 22060431-22060850 28 6.7
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 225 bits (549), Expect = 3e-59
Identities = 105/203 (51%), Positives = 126/203 (62%), Gaps = 1/203 (0%)
Frame = +3
Query: 3 LVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 182
LV+QFSVKHEQ +DCGGGY+K+ +DQK G+TPY IMFGPDICG TKKVH IF+
Sbjct: 101 LVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHTIFTK 160
Query: 183 KGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKD 362
KNHLIKKD+ C+ D +H+YTLI+ PD TY +LIDN + +SG + WD LPPK+IKD
Sbjct: 161 NDKNHLIKKDVPCETDQLSHVYTLIIHPDATYTILIDNVEKQSGSIYEHWDILPPKQIKD 220
Query: 363 PEAKKPEDWXXXXXX-XXXXXXXXXXXXXXXHIPDPDASKPXXXXXXXXXXXXPTMIDNP 539
PEAKKPEDW IPDPDA KP I NP
Sbjct: 221 PEAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDWDDEEDGEWTAPTIPNP 280
Query: 540 DYKGVWAPKQIDDPAYKGPWIHP 608
+YKG W K+I +P Y+G W P
Sbjct: 281 EYKGPWKQKKIKNPNYQGKWKAP 303
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 219 bits (535), Expect = 1e-57
Identities = 101/203 (49%), Positives = 125/203 (61%), Gaps = 1/203 (0%)
Frame = +3
Query: 3 LVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 182
LV+QFSVKHEQ +DCGGGY+K+ +DQK GETPY IMFGPDICG TKKVH I +
Sbjct: 108 LVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGETPYSIMFGPDICGYATKKVHAILTK 167
Query: 183 KGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKD 362
GKNHLIKKD+ CK D TH+YTLI++PD Y +LIDN + ++G + DW+ +PPK +D
Sbjct: 168 NGKNHLIKKDVPCKTDQLTHVYTLIIRPDAKYSILIDNTEKQTGSIYDDWNIIPPKNKRD 227
Query: 363 PEAKKPEDWXXXXXX-XXXXXXXXXXXXXXXHIPDPDASKPXXXXXXXXXXXXPTMIDNP 539
PEAKKPEDW I DP+A+KP I NP
Sbjct: 228 PEAKKPEDWDDNEYIPDPEDKKPEGYDDIPKEITDPEATKPEDWDDEEDGEWTAPTIPNP 287
Query: 540 DYKGVWAPKQIDDPAYKGPWIHP 608
+YKG W K++ +P YKG W P
Sbjct: 288 EYKGPWNQKKLKNPNYKGKWKAP 310
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 216 bits (528), Expect = 1e-56
Identities = 97/203 (47%), Positives = 127/203 (62%), Gaps = 1/203 (0%)
Frame = +3
Query: 3 LVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 182
LV+Q+S+K EQDI+CGGGY+K+ ++QK G+TPY +MFGPDICG TKK+H+I SY
Sbjct: 99 LVLQYSIKFEQDIECGGGYIKLMSGYVNQKKFSGDTPYSLMFGPDICGTQTKKLHLILSY 158
Query: 183 KGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKD 362
+G+N+ IKKD++C+ D TH+YT I++PD +Y +L+DN + ESG + DWD LPP+KIKD
Sbjct: 159 QGQNYPIKKDLQCETDKLTHVYTFILRPDASYSILVDNRERESGSMYTDWDILPPRKIKD 218
Query: 363 PEAKKPEDWXXXXXXXX-XXXXXXXXXXXXXHIPDPDASKPXXXXXXXXXXXXPTMIDNP 539
AKKP+DW IPDP KP P MI NP
Sbjct: 219 VHAKKPKDWDDREYIEDPDAVKPEGYDSIPKEIPDPKDKKPDTWDDDDDGIWKPRMIPNP 278
Query: 540 DYKGVWAPKQIDDPAYKGPWIHP 608
YKG W K+I +P YKG W P
Sbjct: 279 AYKGPWKRKKIKNPNYKGKWKIP 301
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 209 bits (511), Expect = 1e-54
Identities = 95/203 (46%), Positives = 124/203 (61%), Gaps = 1/203 (0%)
Frame = +3
Query: 3 LVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 182
LVVQ+S+K EQDI+CGG Y+K+ ++QK G+TPY MFGPDICG TKK+H+I SY
Sbjct: 99 LVVQYSIKIEQDIECGGAYIKLMSGYVNQKKFGGDTPYSFMFGPDICGDQTKKLHLILSY 158
Query: 183 KGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKD 362
+G+N+ IKKD++C+ D TH YT I++PD +Y +L+DN + E G + DWD LPP+KIK+
Sbjct: 159 QGQNYPIKKDLKCETDKLTHFYTFILRPDASYSLLVDNREREFGSMYTDWDILPPRKIKE 218
Query: 363 PEAKKPEDWXXXXXXXX-XXXXXXXXXXXXXHIPDPDASKPXXXXXXXXXXXXPTMIDNP 539
AKKP+DW IPDP KP P MI NP
Sbjct: 219 SNAKKPKDWDDREYIEDPDEVKPEGYDSIPKEIPDPKDKKPESWDDDDDGVWKPRMIPNP 278
Query: 540 DYKGVWAPKQIDDPAYKGPWIHP 608
+YKG W K+I +P YKG W P
Sbjct: 279 EYKGRWKRKKIKNPNYKGKWKIP 301
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 109 bits (262), Expect = 2e-24
Identities = 79/212 (37%), Positives = 100/212 (47%), Gaps = 14/212 (6%)
Frame = +3
Query: 3 LVVQFSVKHEQDIDCGGGYLKVF---DCRLDQKDMHGETPYEIMFGPDICGPGTKKVHVI 173
+V+QF V+ + ++CGG YLK D D K+ ETPY IMFGPD CG T KVH I
Sbjct: 90 VVLQFEVRLQNGLECGGAYLKYIRPQDAAWDAKEFDNETPYTIMFGPDKCG-STNKVHFI 148
Query: 174 FSYK----GK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLID-NEKVESGELEADW 332
+K GK H +K D +H+YT I+KPDN +L+D EK ++ L AD
Sbjct: 149 LKHKNPKTGKYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGEEKKKANFLSAD- 207
Query: 333 DF----LPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDPDASKPXXXXXX 500
DF +P K I DP+ KKPEDW IPDPDA KP
Sbjct: 208 DFEPSLIPSKTIPDPDDKKPEDW-----------------DERAKIPDPDAVKPDDWDED 250
Query: 501 XXXXXXPTMIDNPDYKGVWAPKQIDDPAYKGP 596
P+ P++IDDP P
Sbjct: 251 APMEIEDEEATKPEGWLDDEPEEIDDPEANKP 282
Score = 47.6 bits (108), Expect = 8e-06
Identities = 31/110 (28%), Positives = 43/110 (39%)
Frame = +3
Query: 258 VKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXX 437
VKPD+ E + E W P++I DPEA KPEDW
Sbjct: 242 VKPDDWDEDAPMEIEDEEATKPEGWLDDEPEEIDDPEANKPEDWDDEEDGEWEAPKIDNP 301
Query: 438 XXXXXHIPDPDASKPXXXXXXXXXXXXPTMIDNPDYKGVWAPKQIDDPAY 587
+ +P +IDNP+YKG+W P++I +P Y
Sbjct: 302 KCEEAP-GCGEWKRPMKQNPAYKGKWHAPLIDNPNYKGIWKPQEIPNPEY 350
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 88.6 bits (210), Expect = 3e-18
Identities = 38/64 (59%), Positives = 47/64 (73%)
Frame = +3
Query: 186 GKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDP 365
G NHLIKKD+ C+ D TH+YTLI++PD Y +LIDN + +G + D D LPPKK KDP
Sbjct: 515 GNNHLIKKDVPCETDQLTHVYTLIIRPDAKYSILIDNTEKRTGSIYGDCDNLPPKKKKDP 574
Query: 366 EAKK 377
EAKK
Sbjct: 575 EAKK 578
>11_06_0634 -
25685216-25685329,25685407-25685511,25685681-25685740,
25685827-25685965,25686056-25686240,25686328-25686411,
25686499-25686621,25687088-25687267,25687364-25687433,
25687520-25687616,25687695-25687770,25688259-25688348,
25688383-25688529,25688647-25688715,25689004-25689177,
25689266-25689336,25689409-25689557,25690723-25690774,
25690865-25691120,25691196-25691287,25691420-25691541,
25691909-25692679,25692883-25692940,25693068-25693107,
25694462-25694595,25694685-25694793,25694896-25694991
Length = 1220
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 557 PDALVVGVVDHSGFXLSIHLIIPIFRLTGIRVRNVLRFV 441
PDA+ + H+GF HL I ++ ++R VLR +
Sbjct: 297 PDAVPNDISQHNGFGSDAHLGAEIGKIATYKIRPVLRMI 335
>07_01_0117 + 894314-896677
Length = 787
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -1
Query: 434 LGFLVFRVGDCGFVVPIFRFLCFWILDLLR 345
LGF+ F++G C + P+F F+ + + ++R
Sbjct: 459 LGFVSFKIGQCCY-KPVFHFMLYCVRCMMR 487
>01_05_0428 + 22060431-22060850
Length = 139
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Frame = -3
Query: 504 PSHHPNLQAYWHQG-PECAQVCP 439
P HHP A HQG P C CP
Sbjct: 6 PPHHPPCAACAHQGRPSCPAGCP 28
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,520,387
Number of Sequences: 37544
Number of extensions: 381487
Number of successful extensions: 1038
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -