Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_M13
(608 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 175 2e-44
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 96 2e-20
SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36) 30 1.3
SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16) 29 3.9
SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25) 29 3.9
SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21) 28 6.8
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_16185| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_7581| Best HMM Match : Pox_T4_N (HMM E-Value=2.1) 28 6.8
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 175 bits (426), Expect = 2e-44
Identities = 84/151 (55%), Positives = 94/151 (62%)
Frame = +3
Query: 156 KKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWD 335
K + + FS K + ++ KDD THLYTLIV+PDNTYEV IDNEKVESGELE DWD
Sbjct: 825 KTLVIQFSVKHEQNIDCGGGYAKDDEMTHLYTLIVRPDNTYEVKIDNEKVESGELEKDWD 884
Query: 336 FLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDPDASKPXXXXXXXXXXX 515
FLPPK IKDPEAKKPEDW +IPDPDA KP
Sbjct: 885 FLPPKTIKDPEAKKPEDWDDKKMIDDPEDKKPEDWDKPQNIPDPDAKKPEDWDDEIDGEW 944
Query: 516 XPTMIDNPDYKGVWAPKQIDDPAYKGPWIHP 608
P MIDNP+YKG W PKQID+P YKG W+HP
Sbjct: 945 EPPMIDNPEYKGEWKPKQIDNPNYKGEWVHP 975
Score = 66.5 bits (155), Expect = 2e-11
Identities = 60/196 (30%), Positives = 82/196 (41%)
Frame = +3
Query: 3 LVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSY 182
LV+QFSVKHEQ+IDCGGGY K D + H Y ++ PD T +V +
Sbjct: 827 LVIQFSVKHEQNIDCGGGYAK------DDEMTH---LYTLIVRPD----NTYEVKI---- 869
Query: 183 KGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKD 362
N ++ KD + T+ E D + ++ E + D+ P+ I D
Sbjct: 870 --DNEKVESGELEKDWDFLPPKTIKDPEAKKPEDWDDKKMIDDPEDKKPEDWDKPQNIPD 927
Query: 363 PEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDPDASKPXXXXXXXXXXXXPTMIDNPD 542
P+AKKPEDW D + P P IDNP+
Sbjct: 928 PDAKKPEDWDDEI--------------------DGEWEPPMIDNPEYKGEWKPKQIDNPN 967
Query: 543 YKGVWAPKQIDDPAYK 590
YKG W +ID+P YK
Sbjct: 968 YKGEWVHPEIDNPEYK 983
>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
Length = 1086
Score = 95.9 bits (228), Expect = 2e-20
Identities = 72/215 (33%), Positives = 92/215 (42%), Gaps = 37/215 (17%)
Frame = +3
Query: 75 CRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-KNHLIKKDIRCK--------- 224
C L Q+ +TPY IMFGPD CG +K+H IF +K KN I++ K
Sbjct: 28 CHLFQESFGDKTPYTIMFGPDKCGED-RKLHFIFRHKNPKNGTIEEKHAKKPTGNYNSVF 86
Query: 225 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWD--FLPP----------------- 347
D THL+TL+V+PDNT+EV ID E V G L D PP
Sbjct: 87 DGKKTHLFTLVVRPDNTFEVFIDQESVNKGSLLEDMTPPVNPPAEIEDPDDKRPEDWDER 146
Query: 348 KKIKDPEAKKPEDWXXXXXXXXXXXXXXX----XXXXXXHIPDPDASKPXXXXXXXXXXX 515
+KI DP+A+KP+DW ++PDP+ KP
Sbjct: 147 EKIPDPDAEKPDDWDEDAPVKIPDTNAKKPEGWLDDEPEYVPDPNGIKPEDWDDEEDGEW 206
Query: 516 XPTMIDNPDYK----GVWAPKQIDDPAYKGPWIHP 608
I NP + G W P D+P YKG W P
Sbjct: 207 EAPQIANPKCEKVGCGEWKPPMADNPEYKGKWSAP 241
>SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)
Length = 551
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 210 DIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWD 335
D+ CKDD V D T E L+D+ +V+S +L D D
Sbjct: 485 DVSCKDDKNRTALHWAVGQDKTIEGLLDDPRVQSLQLVNDQD 526
>SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 297 EKVESGELEADWD-FLPPKKIKDPEAKKPEDW 389
EKV +GE+ ++D LPP++ K PE+ PE +
Sbjct: 48 EKVWTGEVWREFDPLLPPRRQKGPESLDPETY 79
>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +1
Query: 316 N*KPTGTSYLRRRSRIQKQRNLKIGTTNPQSPTRKTRNPRTGTNLST 456
N P GT +++++ R + + +LK T P+S + T PR+G++ T
Sbjct: 158 NLNPEGTRWIQQQGRSRSRFSLK---TTPRSGSSATTTPRSGSSAIT 201
>SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16)
Length = 657
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 316 N*KPTGTSYLRRRSRIQKQRNLKIGTTNPQS-PTRKTRNPRTG 441
N P SYLRR S +++ + GTTNP +K + TG
Sbjct: 444 NGSPVQNSYLRRPSPLKRSLSSHEGTTNPLGVRVKKEKTDSTG 486
>SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)
Length = 662
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 316 N*KPTGTSYLRRRSRIQKQRNLKIGTTNPQS-PTRKTRNPRTG 441
N P SYLRR S +++ + GTTNP +K + TG
Sbjct: 607 NGSPVQNSYLRRPSPLKRSLSSHEGTTNPLGVRVKKEKTDSTG 649
>SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)
Length = 600
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 462 PECAQVCPSPRVSCLPGRGLWVCRPNLQVSLLLDP 358
P +CP+P +P LW C P +LL P
Sbjct: 561 PPATALCPTPFYGPVPHPLLWPCAPPPATALLCGP 595
>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1050
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -3
Query: 465 GPECAQVCPSP--RVSCLPGRGLWVCRPNLQVSLLLDP*SSSEVGSPSRLLIHQIQPS 298
GP C C S R C PG G +C P + L+P V PS +++ PS
Sbjct: 797 GPRCDVFCESDNSRYVCAPGNGSKMCLPGWTGANCLNP-----VIPPSTIMLPSPSPS 849
>SB_16185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -1
Query: 167 VNLLCTRTTDIRPKHNLVGCLAMHVLLVQSTVEYLQVTASAVDVLFVLHTELY 9
+NLL T P + V CLAM+ L Q+ ++Y + + + V T+LY
Sbjct: 13 LNLLIRSQTPY-PLGHAVTCLAMNDYLEQNVIDYHYGMQNEIIITMVCKTKLY 64
>SB_7581| Best HMM Match : Pox_T4_N (HMM E-Value=2.1)
Length = 662
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Frame = +1
Query: 376 NLKIGTTNPQSPTRKTR------NPRTGTNLSTFRT 465
N+K GTT PT K R N +TGT LST T
Sbjct: 387 NMKTGTTLSTLPTHKPRKANRYANMKTGTTLSTLLT 422
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,771,039
Number of Sequences: 59808
Number of extensions: 419299
Number of successful extensions: 1254
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -