Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M12
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces pom...    27   2.3  
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    27   2.3  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    26   3.0  
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       25   5.3  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   5.3  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   5.3  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   7.0  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   9.3  

>SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 150 PLSQKPAYLFPPCSYWVCDSRELVISVQH 64
           PL QK + +  P  YW   S+ELV  V H
Sbjct: 36  PLIQKLSAVQQPIMYWANVSKELVQQVYH 64


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 439 SAVCASMAKLSFSCKALALAMSLFSIASSIS 347
           +A CAS A +   CKALA+  + F+  +S+S
Sbjct: 170 AAYCASKAAVRQLCKALAVEWAEFARINSVS 200


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
 Frame = -2

Query: 505 GGPTLIPVAISIPAF---IIGTHAPSAVCASMAKLSFSCKALALAMSLFSIASSISRASL 335
           GGP   P + + P F   I G   P     S    S S  +     SL+  ASS    +L
Sbjct: 478 GGPQTFPNSGNNPNFNRGIAGIVPPGWRLVSSNTQSLSTNSAMT--SLYQNASSADN-NL 534

Query: 334 GNRL-NEVPILDFMPRSAAGANSV-SAPRNISWPSLRERKTWAPSLRSFEVNLR 179
           G+ L N VP+   + +S   +N+  +A  NIS   LRE  T    LR    N R
Sbjct: 535 GSSLPNVVPLSRGLTQSNETSNTFPAASSNIS-SQLRELHTKIDELRETVSNFR 587


>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 30  AELVSYVELVANAAPKLPVLYYHIPSMSRVEINMPAF 140
           A +    + + N  P +  +YY +P+    EIN+  F
Sbjct: 231 ATMYKMADTIINTYPAINEVYYALPNKHYFEINLAPF 267


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 74  EITSSLLSHTQYEQGGNKYAGFCERGYSS 160
           EIT+S  S   Y + G+ +A +CE+  SS
Sbjct: 374 EITTSWGSPKSYSEIGDLFARYCEKKISS 402


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 491 NTSCYLHTGFHYRHPCAFCSVCFN 420
           NT CY     + R P   CSVC N
Sbjct: 40  NTYCYCGKDRNLRFPDLQCSVCLN 63


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 23/72 (31%), Positives = 33/72 (45%)
 Frame = +3

Query: 282 AALLGIKSSIGTSFNLFPKLARDILDAIENNDIAKARALQEKLSLAIEAHTAEGAWVPIM 461
           AAL+ + S+  T   +F ++   I  A E   +A A  L E +  AIE      A  P  
Sbjct: 783 AALIYVFST-ATEDTVFYRVVNGIQQATE---VAAAYELNEPVDYAIERFCQFTALDPSS 838

Query: 462 KAGMEIATGIKV 497
             G ++ T IKV
Sbjct: 839 VPGTQLNTAIKV 850


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 503 WPNFNTSCYLHTGFHYRHPCAFCSVCFN 420
           W NF   C+ H GF+YR       V FN
Sbjct: 251 WQNF---CF-HIGFNYREGIVLSDVVFN 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,746
Number of Sequences: 5004
Number of extensions: 43717
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)