Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_M12
(530 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23849| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_56637| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-06) 29 2.4
SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23) 29 2.4
SB_6576| Best HMM Match : TPR_2 (HMM E-Value=1.2) 28 5.4
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065) 27 9.5
SB_30920| Best HMM Match : DUP (HMM E-Value=4.6) 27 9.5
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 27 9.5
SB_53066| Best HMM Match : RR_TM4-6 (HMM E-Value=0.68) 27 9.5
SB_41087| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_41086| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_35476| Best HMM Match : zf-C2H2 (HMM E-Value=4.3) 27 9.5
SB_25901| Best HMM Match : DUP (HMM E-Value=4.5) 27 9.5
SB_20290| Best HMM Match : ig (HMM E-Value=2.9e-15) 27 9.5
SB_3566| Best HMM Match : zf-C2H2 (HMM E-Value=4.3) 27 9.5
SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_23849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/30 (30%), Positives = 12/30 (40%)
Frame = -1
Query: 497 NFNTSCYLHTGFHYRHPCAFCSVCFNGQTE 408
N + H Y HPC +C C G +
Sbjct: 13 NLSALTNTHQALFYPHPCCYCEACLAGNND 42
>SB_56637| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-06)
Length = 269
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 445 APSAVCASMAKLS--FSCKALALAMSLFSIASSISRASLGNRLNEVP 311
AP + S AK++ F+C ALA A+S F + A LG+ N VP
Sbjct: 130 APLKIIVSEAKVARVFACTALAFAISWFPVLYYTIAAVLGS-FNSVP 175
>SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23)
Length = 335
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 445 APSAVCASMAKLS--FSCKALALAMSLFSIASSISRASLGNRLNEVP 311
AP + S AK++ F+C ALA A+S F + A LG+ N VP
Sbjct: 196 APLKIIVSEAKVARVFACTALAFAISWFPVLYYTIAAVLGS-FNSVP 241
>SB_6576| Best HMM Match : TPR_2 (HMM E-Value=1.2)
Length = 116
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 3 ELYFKPATVAELVSYVELVANAAPKLPVLYY 95
ELY K T E S ++LVAN K+ YY
Sbjct: 10 ELYLKMETSGESFSLLQLVANDCYKMGQFYY 40
>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 418 AKLSFSCKALALAMSLFSIASSISRASLGNRLNEVP 311
A L+ C ALAL + + ASS+S + G+ +E P
Sbjct: 1502 AHLNSGCPALALQVLMELPASSLSESKTGSTSDEAP 1537
>SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)
Length = 1033
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 339 LARDILDAIENNDIAKARALQEKLSLAIE 425
L D+ D I+NNDI R + E AIE
Sbjct: 248 LGSDLNDIIDNNDITDFRRVTEAFHAAIE 276
>SB_30920| Best HMM Match : DUP (HMM E-Value=4.6)
Length = 404
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 241 PSLRERKTWAPSLRSFEVNLRPLKF--DIRAVASFTKAGIFISTLLIL 104
PSL E ++ S F+V +P+ F D +VA T + +S L IL
Sbjct: 164 PSLVESDQYSTSDEDFDVTKQPVSFSEDEASVALMTTTSVNVSHLTIL 211
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 351 ILDAIENNDIAKARALQEKLSLAIEAHTAEGAWVPIMKAGMEIATGIK 494
+LD+I+ + +RAL++ L + E +V + + ME+AT ++
Sbjct: 4436 LLDSIQGDKETISRALKQNKELKTQLEEIEKRFVKMSEENMELATQLE 4483
>SB_53066| Best HMM Match : RR_TM4-6 (HMM E-Value=0.68)
Length = 411
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 241 PSLRERKTWAPSLRSFEVNLRPLKF--DIRAVASFTKAGIFISTLLIL 104
PSL E ++ S F+V +P+ F D +VA T + +S L IL
Sbjct: 260 PSLVESDQYSTSDEDFDVTKQPVSFSEDEASVALMTTTSVNVSHLTIL 307
>SB_41087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 491
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 241 PSLRERKTWAPSLRSFEVNLRPLKF--DIRAVASFTKAGIFISTLLIL 104
PSL E ++ S F+V +P+ F D +VA T + +S L IL
Sbjct: 105 PSLVESDQYSTSDEDFDVTKQPVSFSEDEASVALMTTTSVNVSHLTIL 152
>SB_41086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 241 PSLRERKTWAPSLRSFEVNLRPLKF--DIRAVASFTKAGIFISTLLIL 104
PSL E ++ S F+V +P+ F D +VA T + +S L IL
Sbjct: 53 PSLVESDQYSTSDEDFDVTKQPVSFSEDEASVALMTTTSVNVSHLTIL 100
>SB_35476| Best HMM Match : zf-C2H2 (HMM E-Value=4.3)
Length = 243
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 241 PSLRERKTWAPSLRSFEVNLRPLKF--DIRAVASFTKAGIFISTLLIL 104
PSL E ++ S F+V +P+ F D +VA T + +S L IL
Sbjct: 92 PSLVESDQYSTSDEDFDVTKQPVSFSEDEASVALMTTTSVNVSHLTIL 139
>SB_25901| Best HMM Match : DUP (HMM E-Value=4.5)
Length = 186
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 241 PSLRERKTWAPSLRSFEVNLRPLKF--DIRAVASFTKAGIFISTLLIL 104
PSL E ++ S F+V +P+ F D +VA T + +S L IL
Sbjct: 35 PSLVESDQYSTSDEDFDVTKQPVSFSEDEASVALMTTTSVNVSHLTIL 82
>SB_20290| Best HMM Match : ig (HMM E-Value=2.9e-15)
Length = 978
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +3
Query: 87 LYYHIPSMSRVEINMPAFVKEATARISNFKGLKFTSNDLNEGAQVLRSLKEGQE 248
LY H S +E+ + + +A++ +SN F++ N+ + S G E
Sbjct: 335 LYCHATGTSPLEVTLQRYNSQASSPLSNSTSYTFSAIKKNDQGDYMCSATNGDE 388
>SB_3566| Best HMM Match : zf-C2H2 (HMM E-Value=4.3)
Length = 323
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 241 PSLRERKTWAPSLRSFEVNLRPLKF--DIRAVASFTKAGIFISTLLIL 104
PSL E ++ S F+V +P+ F D +VA T + +S L IL
Sbjct: 93 PSLVESDQYSTSDEDFDVTKQPVSFSEDEASVALMTTTSVNVSHLTIL 140
>SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 529
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 123 INMPAFVKEATARISNFKGLKFTSNDL--NEGAQVLRSLKEGQEMFLGADTLLAPAALLG 296
IN+P+ E T ++N + +++ + G + +SLK + +GA L PAAL
Sbjct: 39 INIPSKQNEKTKNLTNSEISRYSRQLILPEIGVKGQQSLKSSSVLVVGAGGLGCPAALYL 98
Query: 297 IKSSIG 314
+ IG
Sbjct: 99 AAAGIG 104
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,292,137
Number of Sequences: 59808
Number of extensions: 319095
Number of successful extensions: 828
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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