Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M11
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0645 + 21475126-21475293,21475386-21475538,21478101-214782...    28   5.3  
03_05_0273 - 22618177-22618370,22618441-22618531                       27   7.0  

>12_02_0645 +
           21475126-21475293,21475386-21475538,21478101-21478249,
           21478449-21478526,21478604-21478697,21478920-21478994,
           21479341-21479637,21479722-21479789,21479876-21479930,
           21480137-21480275,21480439-21480623,21480748-21481119
          Length = 610

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -2

Query: 219 LRSRLPLPEGFVRILIHFRQVGLFNWS 139
           LRS + LPE  +RI+ H R++G+F+ S
Sbjct: 209 LRSNIQLPE-CLRIVAHLRRIGVFSES 234


>03_05_0273 - 22618177-22618370,22618441-22618531
          Length = 94

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 280 TRNLLLIKM*FPGGVRGLTWPSQPAAAAGGFCSYSDPLQAGR 155
           TR   L+ +     V   +WP QP  AA GFC     ++ GR
Sbjct: 3   TRRAALLMLLLLVVVAAASWP-QPCDAASGFCGSKCAVRCGR 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,685,915
Number of Sequences: 37544
Number of extensions: 177883
Number of successful extensions: 537
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)