Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M11
         (526 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)             31   0.58 
SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)               29   2.3  
SB_19802| Best HMM Match : fn3 (HMM E-Value=0)                         29   3.1  
SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
          Length = 520

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 17/33 (51%), Positives = 18/33 (54%)
 Frame = +3

Query: 189 NPPAAAAGCEGQVRPRTPPGNYILINNKFLVIP 287
           N P A    EG   P TP  + ILI NK LVIP
Sbjct: 357 NYPGAKIIAEGANGPTTPEADQILIANKQLVIP 389


>SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)
          Length = 131

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 296 LSLSTSIYLLFHFSFFYFQHSTSKHKINFFYHNXXXXXXXXXXXSSANM 442
           +++ST I L+ H+   + QH T  H  + ++H+           SSAN+
Sbjct: 41  ITIST-ITLVLHYHHHHRQHITVHHHYHHYHHHHHPPSSLSSSASSANI 88


>SB_19802| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1075

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +2

Query: 272 ISRHPVSKLSLSTSIYLLFHFSFFYFQHSTSK 367
           IS  PV  +S +TSI+L  HF+  Y +HST+K
Sbjct: 217 ISTIPVIDVSPTTSIHLTTHFNTDY-RHSTAK 247


>SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 195 PAAAAGCEGQVRPRTPPGNYILINNKFL 278
           P A  G     RPR  PG+  L NNK++
Sbjct: 190 PGARPGARPGARPRVRPGDASLRNNKYV 217


>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3003

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 171  GSEYEQN-PPAAAAGCEGQVRPRTPPGNYI 257
            GSE E + PP++A G  G   PR+P   Y+
Sbjct: 1180 GSEDEYDAPPSSAQGSAGHSAPRSPLPQYV 1209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,321,819
Number of Sequences: 59808
Number of extensions: 187738
Number of successful extensions: 298
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)