Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M11
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025458-5|AAB70974.1|  298|Caenorhabditis elegans Squat protein...    32   0.22 
U97193-5|AAV34804.1|  783|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U14635-8|AAK84492.1|  307|Caenorhabditis elegans Collagen protei...    28   3.6  
L15418-1|AAA17445.1|  307|Caenorhabditis elegans col-36 collagen...    28   3.6  
Z78060-3|CAB01488.2|  215|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AF025458-5|AAB70974.1|  298|Caenorhabditis elegans Squat protein 2
           protein.
          Length = 298

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +3

Query: 171 GSEYEQNPPAAAAGCEGQVRPRTPPG 248
           G E  Q PP    GCE    PRTPPG
Sbjct: 272 GPEGPQGPPGEPGGCEHCPIPRTPPG 297


>U97193-5|AAV34804.1|  783|Caenorhabditis elegans Hypothetical
           protein C06A5.3b protein.
          Length = 783

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
 Frame = +3

Query: 150 RVRPA*SG-SEYEQNPPAAAAG------CEGQVRPRTPPGN 251
           R RP   G S+ E+ PP +A+G      C GQVRP+   GN
Sbjct: 478 RARPKHYGYSKVEKTPPISASGHRHCVNCNGQVRPQMCGGN 518


>U14635-8|AAK84492.1|  307|Caenorhabditis elegans Collagen protein
           36 protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 171 GSEYEQNPPAAAAGCEGQVRPRTPPG 248
           G +  Q PP     C+    PRTPPG
Sbjct: 281 GPQGPQGPPGDEGSCDHCPEPRTPPG 306


>L15418-1|AAA17445.1|  307|Caenorhabditis elegans col-36 collagen
           protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 171 GSEYEQNPPAAAAGCEGQVRPRTPPG 248
           G +  Q PP     C+    PRTPPG
Sbjct: 281 GPQGPQGPPGDEGSCDHCPEPRTPPG 306


>Z78060-3|CAB01488.2|  215|Caenorhabditis elegans Hypothetical
           protein C34D1.4 protein.
          Length = 215

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 278 RHPVSKLSLSTSIYLLFHFSF 340
           RH +  LSL T IYLL H  F
Sbjct: 19  RHLIFSLSLHTLIYLLLHMCF 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,407,800
Number of Sequences: 27780
Number of extensions: 155603
Number of successful extensions: 556
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)