Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M09
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    26   3.3  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   4.4  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   5.8  
SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyce...    25   5.8  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    25   7.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   7.6  

>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 305 EDEQADRLRLPEDRH-RHRRPSQRELEE 385
           EDE+AD++    + H   RR SQRE +E
Sbjct: 85  EDEEADKIYQSVEEHLSKRRKSQREKQE 112


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 195 CRSEGVELARDLDYKAAASWIGHP-YFD 275
           C  EG+++         A W+GHP YFD
Sbjct: 775 CIYEGIQIDAAFASFFVAKWLGHPSYFD 802


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +3

Query: 282 DNSSDFDKKMNRLIACVCQKIGIDTGDRLNVNSKKRKFLVKGPLAP-ESEFPPFQDFDVV 458
           D+ + F K+   L+  + + + I   D L +N K+R   VK P AP  +  PP +     
Sbjct: 286 DDYAIFQKRC--LVKKLKRTLNIKDSDELLINPKRRPIEVK-PAAPVPTPAPPVKTSPHP 342

Query: 459 HNYLQSDLRKAQVR 500
            +Y     R  +VR
Sbjct: 343 ASYRPQPTRNVEVR 356


>SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 453 VVHNYLQSDLRKAQVRLRKRGQKGH 527
           VVH+ L+ DL K ++RL     +GH
Sbjct: 112 VVHDELELDLGKVKLRLPGGSHRGH 136


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 121 LLSRNSTLFQLLAAIIVSHFSFVINALASMAPLS 20
           L  R  T  +++  +I+S+F+ V   LA M P S
Sbjct: 584 LSDREKTDTEVIKLLIMSYFNIVKRTLADMVPKS 617


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 357 GDRLNVNSKKRKFLVKGPLAPESEFPP 437
           G   NV S+  KF  +GP  P +  PP
Sbjct: 226 GHAPNVTSESPKFPNRGPSIPSASVPP 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,130
Number of Sequences: 5004
Number of extensions: 39962
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)