Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M09
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0099 + 1493177-1493453,1494961-1495175,1495490-1496074           31   0.83 
01_06_1271 + 35890317-35890762,35891113-35891173,35891669-358918...    31   0.83 
11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,658...    29   1.9  
07_03_1276 - 25387539-25388317,25388639-25388888                       28   4.4  
07_03_0902 - 22435692-22436156,22436684-22436923,22437228-224373...    28   4.4  
03_05_0827 + 28016157-28017575                                         28   5.9  
01_06_0919 - 32993752-32993856,32994383-32994592,32994666-329952...    28   5.9  

>09_01_0099 + 1493177-1493453,1494961-1495175,1495490-1496074
          Length = 358

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 302 QEDEQADRLRLPEDRHRHRRPSQRELEETQVPRQGPARARIGVPSVSGLRCRSQLLAERF 481
           QED     L + E+        QR  E++Q PR+  A + +  P V   R RS  LA ++
Sbjct: 5   QEDSFDLPLFVEEEDEAGAAAKQRRREQSQKPRRPRAPSFLDTPEVKERRARSSALAAKY 64


>01_06_1271 +
           35890317-35890762,35891113-35891173,35891669-35891813,
           35891903-35891982,35892465-35892548,35892644-35892718,
           35893150-35893242,35893315-35893503
          Length = 390

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 124 YLLSRNSTLFQLLAAIIVSHFSFVINALASMAPLSHM 14
           YLL     LF LL A+I S F  +   L S++P SH+
Sbjct: 37  YLLREQRLLFVLLGALIASSFFLLRPYLFSLSPSSHV 73


>11_01_0787 +
           6578158-6579287,6579439-6580870,6581087-6581097,
           6581525-6582125,6583981-6585054,6585745-6585873,
           6585925-6585963
          Length = 1471

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 171 FYSTEDHACRSEGVELARDL 230
           FYST+DH C SE VE+A  +
Sbjct: 340 FYSTKDHECPSELVEVAASI 359


>07_03_1276 - 25387539-25388317,25388639-25388888
          Length = 342

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +3

Query: 66  WETIMAANNWNNVELRDNRYNHIVHMVSAANGAEDFYSTEDHACRSEGVELARDLDYK 239
           W      N+ +    +DN ++H +H V AA  A++F   +D +    G +L +   Y+
Sbjct: 257 WLDAFELNDLDGSRCKDNAFDHQIHKVEAA-VADEFAFYDDPSYMQLGYQLDQGNSYE 313


>07_03_0902 -
           22435692-22436156,22436684-22436923,22437228-22437349,
           22437441-22437587,22437753-22437882,22437981-22438116,
           22438223-22438428,22438644-22438844,22438999-22439157,
           22439781-22439858,22440453-22440542,22440625-22440777,
           22440873-22440991,22441190-22441328,22441422-22441525,
           22441944-22441989,22442087-22442252,22442356-22442383,
           22442460-22442610,22442686-22442829,22442912-22443013,
           22443566-22444093
          Length = 1217

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 240 AAASWIGHPYFDVIDNSSDFDKKMNRLIACVCQKIGIDTGDRLNVNSKKR 389
           AA  W+G+  F VIDN +  +   N  +A   + +G      +N  + ++
Sbjct: 444 AAVLWLGNISFSVIDNENHVEIVSNEGLATAAKLLGCSAPQLMNALTTRK 493


>03_05_0827 + 28016157-28017575
          Length = 472

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 79  WPPTIGITWNCVITDIITSCIWCRLLMALKISTPLRIMP 195
           W P + I  +  +   +T C W  ++  L+   PL ++P
Sbjct: 340 WAPQVSILAHAAVCAFLTHCGWGSVVEGLQFGHPLIMLP 378


>01_06_0919 -
           32993752-32993856,32994383-32994592,32994666-32995220,
           32995705-32995926,32996381-32996511,32997456-32998353,
           32998453-32998530,32998612-32998683,32998728-32998763,
           32999413-33000353,33000531-33000659,33000751-33000894,
           33000994-33001060,33002434-33002502,33003144-33003278
          Length = 1263

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 90  NWNNVELRDNRYNHIVHMVSAANGAEDFYSTEDHACR 200
           NW+N    D  ++ +  MV   NG E F  +ED + R
Sbjct: 98  NWSNYSHTDPSHSQMDVMVELNNGGESFDHSEDTSYR 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,459,743
Number of Sequences: 37544
Number of extensions: 287416
Number of successful extensions: 999
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)