Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_M09
(560 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53361| Best HMM Match : DUF333 (HMM E-Value=1.4) 136 4e-44
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 31 0.49
SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_3700| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17) 27 7.9
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0) 27 7.9
>SB_53361| Best HMM Match : DUF333 (HMM E-Value=1.4)
Length = 277
Score = 136 bits (329), Expect(2) = 4e-44
Identities = 55/107 (51%), Positives = 79/107 (73%)
Frame = +3
Query: 3 NCLIICDRGAMDASAFITKEKWETIMAANNWNNVELRDNRYNHIVHMVSAANGAEDFYST 182
NCL+ICDRG MD SA+ E W+ ++ N W ++LR+ RY+ +VH++S+A GAE FY+
Sbjct: 18 NCLVICDRGTMDPSAYCEPEHWQKMLDKNGWRTMDLREGRYDQVVHLLSSACGAEAFYTL 77
Query: 183 EDHACRSEGVELARDLDYKAAASWIGHPYFDVIDNSSDFDKKMNRLI 323
++ RSEG++LARDLD K W+GHPYFDVIDN+ +FD K+++ I
Sbjct: 78 ANNNARSEGLQLARDLDKKTQQVWVGHPYFDVIDNTMEFDAKVHKAI 124
Score = 59.7 bits (138), Expect(2) = 4e-44
Identities = 26/44 (59%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
Frame = +3
Query: 429 FPPFQDFDVVHNYL--QSDLRKAQVRLRKRGQKGHWSYIHTLRK 554
FPPF+DFDVVHNYL + + Q RLRKRGQ G + Y+HT+R+
Sbjct: 127 FPPFEDFDVVHNYLLVANPEKGTQARLRKRGQNGRYMYMHTVRR 170
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 31.5 bits (68), Expect = 0.49
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +2
Query: 308 DEQADRLRLPEDRHRHRRPSQRELEETQVPRQGPARARIGVPS 436
DEQ D R+ E R RH R +R L +TQ R R PS
Sbjct: 389 DEQDDATRIAEQR-RHLREEERRLSQTQENRDSKFRPESDDPS 430
>SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 560
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 63 KWETIMAANNWNNVELRDNRYNHIV 137
K+ TI+ AN+WN VE ++++ H++
Sbjct: 100 KYTTILDANSWNKVEYQNSKEMHLI 124
>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Frame = +3
Query: 159 GAEDFYSTEDHACRSEGVELARDLDYKAAASWIGHPYFDVIDNSSDFDKKMNRLIACV-- 332
G FY +D CR V + L + + Y + NS D D++ L+ +
Sbjct: 610 GQNSFYFQQDANCRQIKVTCLKSLKEEIEKNLQAKSYKETTINSGDTDEEKIFLLDKLEF 669
Query: 333 CQKIGIDTGDRL-NVNSKKRKFLVKGP 410
+ I ++ D + V+ +K++ LVKGP
Sbjct: 670 GKAIQVEYPDMIVQVDLQKQEVLVKGP 696
>SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 127 ITSCIWCRLLMALKISTPLRIMPAAQKVSNWPGTWTTKRPRR 252
I SC+ CR L A + + +PA ++ GTW K RR
Sbjct: 554 IASCVTCRRLRAPAVEKKMSDLPAV----DYFGTWAVKEGRR 591
>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4275
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 305 EDEQADRLRLPEDRHRHRRPSQRELEETQVPRQGPA 412
+D +A ++ +D RH PS+R E + P QGPA
Sbjct: 2581 DDAKASKICFIKDLRRH--PSERIFEHSWEPLQGPA 2614
>SB_3700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = +1
Query: 82 PPTIGITWNC--VITDIITSCI 141
PPT+G+TW ++ I+ SC+
Sbjct: 106 PPTLGVTWGAKSIVGQILASCV 127
>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
Length = 1860
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 219 ARDLDYKAAASWIGHPYFDVIDNS-SDFDKKMNR 317
+R ++Y+A S +GH DN+ DFD+ NR
Sbjct: 1706 SRAVNYEAIGSTVGHELLHGFDNAGKDFDQHGNR 1739
>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 729
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 503 QSDLRFTQIALQVVVNDIEVLKRR-ELRFGRERALDEELAFLRVHVETV 360
Q+DL FT+ LQ V D E LK++ E DEE L +E +
Sbjct: 622 QTDLEFTKAELQSTVEDNEALKKQVEELTETIHKKDEEFVTLSNEIEHI 670
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,559,922
Number of Sequences: 59808
Number of extensions: 325001
Number of successful extensions: 1030
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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