Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_M09
(560 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52320.1 68416.m05750 F-box family protein contains F-box dom... 33 0.17
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin... 30 0.92
At5g59790.1 68418.m07495 expressed protein 29 1.6
At1g50360.1 68414.m05645 myosin family protein contains Pfam pro... 29 2.1
At1g33750.1 68414.m04172 terpene synthase/cyclase family protein... 29 2.1
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 29 2.1
At2g27410.1 68415.m03312 hypothetical protein contains Pfam prof... 28 4.9
At5g04690.1 68418.m00477 expressed protein 27 6.5
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 27 6.5
At2g43820.1 68415.m05447 UDP-glucoronosyl/UDP-glucosyl transfera... 27 6.5
At2g03030.1 68415.m00256 Toll-Interleukin-Resistance (TIR) domai... 27 6.5
At5g62130.1 68418.m07798 Per1-like protein-related 27 8.6
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 27 8.6
At4g15280.1 68417.m02340 UDP-glucoronosyl/UDP-glucosyl transfera... 27 8.6
At4g15260.1 68417.m02338 UDP-glucoronosyl/UDP-glucosyl transfera... 27 8.6
At3g05390.1 68416.m00589 expressed protein ; expression supporte... 27 8.6
>At3g52320.1 68416.m05750 F-box family protein contains F-box domain
Pfam:PF00646
Length = 390
Score = 32.7 bits (71), Expect = 0.17
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -1
Query: 164 SAISSRHHMHDVIISVITQFHVIPIVGGH 78
S+ SSRH D +SVI Q IPI+GG+
Sbjct: 94 SSSSSRHDHSDTSVSVIDQHSTIPIMGGY 122
>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
[Arabidopsis thaliana] GI:6491702; similar to myosin
GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
profiles: PF00063: myosin head (motor domain), PF00612:
IQ calmodulin-binding motif; identical to cDNA myosin
(ATM) GI:297068
Length = 1166
Score = 30.3 bits (65), Expect = 0.92
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 240 AAASWIGHPYFDVIDNSSDFDKKMNRLIACVCQKIGIDTGDRLNVNSKKRKFLVK 404
AA W+G+ F VIDN + + + ++ V + IG + + L + KR V+
Sbjct: 420 AAVLWLGNVSFTVIDNENHVEPVADESLSTVAKLIGCNINE-LTLTLSKRNMRVR 473
>At5g59790.1 68418.m07495 expressed protein
Length = 423
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 317 ADRLRLPEDRHRHRRPSQRELEETQVP 397
AD +DR R RRP++ E+EE + P
Sbjct: 206 ADASTQTDDRRRRRRPAKEEIEEVKSP 232
>At1g50360.1 68414.m05645 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1153
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 240 AAASWIGHPYFDVIDNSSDFDKKMNRLIACVCQKIGIDTGDRLNVNSKKRKFLV 401
AA W+G+ F +IDN + + + + ++ V + IG + + L + KR V
Sbjct: 412 AAVLWLGNVSFTIIDNENHVEPEPDESLSTVAKLIGCNINE-LKLALSKRNMRV 464
>At1g33750.1 68414.m04172 terpene synthase/cyclase family protein
similar to DELTA-CADINENE SYNTHASE ISOZYME A GB:Q43714
from [Gossypium arboreum]
Length = 603
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -1
Query: 497 DLRFTQIALQVVVNDIEVLKRRELRFGRERALDEELAFLRVHVETVAG 354
D +F + + V +++ + L E LDE L+F R H+E++AG
Sbjct: 188 DAKFKEHLVSDVRGMLQLYEAAHLATPFETILDEALSFTRYHLESLAG 235
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 302 QEDEQADRLRLPEDRHRHRRPSQRELEETQVPRQ 403
Q +E +DR E RHRHR+ + + + Q P++
Sbjct: 710 QSEENSDRETHKERRHRHRKRRRTQNSDDQNPKE 743
>At2g27410.1 68415.m03312 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 309
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 441 QDFDVVHNYLQSDLRKAQVRLRKRGQKGHWSYI 539
+D V N++ +L K + LRK KG+W Y+
Sbjct: 187 RDNGVPVNFVDPELNKHVLELRKWKMKGNWIYV 219
>At5g04690.1 68418.m00477 expressed protein
Length = 625
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 300 DKKMNRLIACVCQKIGIDTGDRLNVNSKKRKFLVKG 407
D M +++ C+ + IGID RL V + K L+KG
Sbjct: 268 DTLMGKVLKCLSKCIGIDEVYRLKVMHLQAKKLLKG 303
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 27.5 bits (58), Expect = 6.5
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 276 VIDNSSDFDKKMNRLIACVCQKIGIDTGDRLNVNSKKRKFLVKGPLAPES-EFPPFQDFD 452
V+D + + D + L +K+ + GD + + KKRK V LA E+ E P +
Sbjct: 31 VVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMNK 90
Query: 453 VVHNYLQ 473
VV + L+
Sbjct: 91 VVRSNLR 97
>At2g43820.1 68415.m05447 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 449
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +1
Query: 79 WPPTIGITWNCVITDIITSCIWCRLLMALKISTPLRIMP 195
W P + + N I +T C W + AL P+ MP
Sbjct: 324 WSPQLQVLSNKAIGCFLTHCGWNSTMEALTFGVPMVAMP 362
>At2g03030.1 68415.m00256 Toll-Interleukin-Resistance (TIR)
domain-containing protein domain signature TIR exists,
suggestive of a disease resistance protein.
Length = 204
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 285 NSSDFDKKMNRLIACVCQKIGIDTGDRLNVNSKKRK 392
+ +DF K++ + + CV IG++ + + KKRK
Sbjct: 152 SEADFIKEVVKAVQCVVATIGLEEEEENHFGKKKRK 187
>At5g62130.1 68418.m07798 Per1-like protein-related
Length = 343
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 123 YNHIVHMVSAANGAEDFYSTEDHACRSEGVELARDLDYKAAASWIG 260
YN IVH+ + F+S+ C S VEL LDY +A G
Sbjct: 162 YNGIVHIYAIIVMNSLFWSS---ICHSRDVELTERLDYSSATVLAG 204
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 27.1 bits (57), Expect = 8.6
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 276 VIDNSSDFDKKMNRLIACVCQKIGIDTGDRLNVNSKKRKFLVKGPLAPES-EFPPFQDFD 452
V+D + + D + L +K+ + GD + + KKRK V LA E+ E P +
Sbjct: 31 VVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMNK 90
Query: 453 VVHNYLQ 473
VV + L+
Sbjct: 91 VVRSNLR 97
>At4g15280.1 68417.m02340 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 478
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +1
Query: 79 WPPTIGITWNCVITDIITSCIWCRLLMALKISTPLRIMP--AAQKVS 213
W P + + I +T C W +L +L P+ P A QKV+
Sbjct: 346 WAPQVAVLEKPAIGGFVTHCGWNSILESLWFGVPMVTWPLYAEQKVN 392
>At4g15260.1 68417.m02338 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 359
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +1
Query: 79 WPPTIGITWNCVITDIITSCIWCRLLMALKISTPLRIMP--AAQKVS 213
W P + + I +T C W +L +L P+ P A QKV+
Sbjct: 226 WAPQVAVLEKPAIGGFVTHCGWNSMLESLWFGVPMVTWPLYAEQKVN 272
>At3g05390.1 68416.m00589 expressed protein ; expression supported
by MPSS
Length = 463
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 159 GAEDFYSTEDHACRSEGVELARDLDYKAAA 248
G E Y+T HAC +EL + +DY A
Sbjct: 172 GTERVYNTIGHACALMKMELEKYMDYDVGA 201
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,253,295
Number of Sequences: 28952
Number of extensions: 216880
Number of successful extensions: 825
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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