Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_M08
(533 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6) 30 1.4
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_5613| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_1479| Best HMM Match : OTU (HMM E-Value=0.34) 28 5.5
SB_57305| Best HMM Match : rve (HMM E-Value=6.6e-22) 27 7.3
SB_51200| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_43123| Best HMM Match : rve (HMM E-Value=6e-18) 27 7.3
SB_39709| Best HMM Match : rve (HMM E-Value=6e-18) 27 7.3
SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24) 27 7.3
SB_25327| Best HMM Match : rve (HMM E-Value=6.6e-22) 27 7.3
SB_19527| Best HMM Match : rve (HMM E-Value=1e-20) 27 7.3
SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17) 27 7.3
SB_53754| Best HMM Match : M-factor (HMM E-Value=5.8) 27 7.3
SB_50204| Best HMM Match : rve (HMM E-Value=6.6e-22) 27 7.3
SB_47140| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_46067| Best HMM Match : rve (HMM E-Value=6e-18) 27 7.3
SB_34611| Best HMM Match : rve (HMM E-Value=6.6e-22) 27 7.3
SB_25480| Best HMM Match : rve (HMM E-Value=6.6e-22) 27 7.3
SB_16064| Best HMM Match : rve (HMM E-Value=6.6e-22) 27 7.3
SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18) 27 7.3
SB_1297| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6)
Length = 339
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 497 DMGVYKEVRVNLVRSG*SNTDAVRPVEDCSSESIY 393
+MG V+ N +RSG +TD PV S+S+Y
Sbjct: 151 NMGWASNVKDNWIRSGDYHTDTAHPVNITDSQSLY 185
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 459 YEIYPYFFVDSHVINKAFMMKMTK 530
+++YP F++D+H+ NKA + + K
Sbjct: 1787 HDVYPQFYLDTHLTNKAVLEAVDK 1810
>SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 136 RTSRKSRGNICWRKTRTSTRNPMLLRNSWRPSKW 237
R + S I WR S+R+P L+R S S W
Sbjct: 205 RIIKNSNYEILWRALGLSSRSPTLMRGSLTVSVW 238
>SB_5613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +1
Query: 109 TTYCSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWRPSKWACYRVVRSSFTQMRCK 285
TT+ +CT T ++ N+ W+ + TR+ +W KW R + M K
Sbjct: 5 TTWRGNVCTHTRHGAKDNMAWKWMHSHTRHGAKDNMAW---KWMLSRTRHGAKDNMAWK 60
>SB_1479| Best HMM Match : OTU (HMM E-Value=0.34)
Length = 554
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = -1
Query: 176 FLQHIFPRDFLDVLVHSWLQYV----VQEFHDADLLHFHICLHETVFSDNNVERVISV 15
F +I P +++D + +YV +Q F ADLLHF I + TV D E + ++
Sbjct: 86 FEDNILPSNWIDAVQKLRGEYVTDMIIQSF--ADLLHFKIIIIVTVHGDPTAECIETI 141
>SB_57305| Best HMM Match : rve (HMM E-Value=6.6e-22)
Length = 351
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 313 MRKTLTACSICNAFV*TKTSPRGSM---PILKVSMNFVTTSDFEYLSVFSSSIYSLATSL 143
++ +++CSICNAF PR ++ + + ++T FEY + Y L T L
Sbjct: 5 IKDKISSCSICNAF--RNQQPRETLLPREVPGLPWQVISTDIFEY----AGHSYLLVTDL 58
Query: 142 MSSY 131
S Y
Sbjct: 59 YSKY 62
>SB_51200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 938
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 313 MRKTLTACSICNAFV*TKTSPRGSM---PILKVSMNFVTTSDFEYLSVFSSSIYSLATSL 143
++ +++CSICNAF PR ++ + + ++T FEY + Y L T L
Sbjct: 660 IKDKISSCSICNAF--RNQQPRETLLPREVPGLPWQVISTDIFEY----AGHSYLLVTDL 713
Query: 142 MSSY 131
S Y
Sbjct: 714 YSKY 717
>SB_43123| Best HMM Match : rve (HMM E-Value=6e-18)
Length = 400
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 313 MRKTLTACSICNAFV*TKTSPRGSM---PILKVSMNFVTTSDFEYLSVFSSSIYSLATSL 143
++ +++CSICNAF PR ++ + + ++T FEY + Y L T L
Sbjct: 229 IKDKISSCSICNAF--RNQQPRETLLPREVPGLPWQVISTDIFEY----AGHSYLLVTDL 282
Query: 142 MSSY 131
S Y
Sbjct: 283 YSKY 286
>SB_39709| Best HMM Match : rve (HMM E-Value=6e-18)
Length = 383
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 313 MRKTLTACSICNAFV*TKTSPRGSM---PILKVSMNFVTTSDFEYLSVFSSSIYSLATSL 143
++ +++CSICNAF PR ++ + + ++T FEY + Y L T L
Sbjct: 212 IKDKISSCSICNAF--RNQQPRETLLPREVPGLPWQVISTDIFEY----AGHSYLLVTDL 265
Query: 142 MSSY 131
S Y
Sbjct: 266 YSKY 269
>SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)
Length = 1497
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -3
Query: 279 THLCERRPHHAVACPF*RSP*IS-*QHRISSTCPCFPPAYIP 157
T L ERR H V+C RSP S Q R P P A+ P
Sbjct: 1275 TELTERRKRHFVSCNTLRSPVASEPQGREGLRAPKMPSAHTP 1316
>SB_25327| Best HMM Match : rve (HMM E-Value=6.6e-22)
Length = 319
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 313 MRKTLTACSICNAFV*TKTSPRGSM---PILKVSMNFVTTSDFEYLSVFSSSIYSLATSL 143
++ +++CSICNAF PR ++ + + ++T FEY + Y L T L
Sbjct: 23 IKDKISSCSICNAF--RNQQPRETLLPREVPGLPWQVISTDIFEY----AGHSYLLVTDL 76
Query: 142 MSSY 131
S Y
Sbjct: 77 YSKY 80
>SB_19527| Best HMM Match : rve (HMM E-Value=1e-20)
Length = 311
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 313 MRKTLTACSICNAFV*TKTSPRGSM---PILKVSMNFVTTSDFEYLSVFSSSIYSLATSL 143
++ +++CSICNAF PR ++ + + ++T FEY + Y L T L
Sbjct: 83 IKDKISSCSICNAF--RNQQPRETLLPREVPGLPWQVISTDIFEY----AGHSYLLVTDL 136
Query: 142 MSSY 131
S Y
Sbjct: 137 YSKY 140
>SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
Length = 1432
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 313 MRKTLTACSICNAFV*TKTSPRGSM---PILKVSMNFVTTSDFEYLSVFSSSIYSLATSL 143
++ +++CSICNAF PR ++ + + ++T FEY + Y L T L
Sbjct: 876 IKDKISSCSICNAF--RNQQPRETLLPREVPGLPWQVISTDIFEY----AGHSYLLVTDL 929
Query: 142 MSSY 131
S Y
Sbjct: 930 YSKY 933
>SB_53754| Best HMM Match : M-factor (HMM E-Value=5.8)
Length = 412
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 313 MRKTLTACSICNAFV*TKTSPRGSM---PILKVSMNFVTTSDFEYLSVFSSSIYSLATSL 143
++ +++CSICNAF PR ++ + + ++T FEY + Y L T L
Sbjct: 331 IKDKISSCSICNAF--RNQQPRETLLPREVPGLPWQVISTDIFEY----AGHSYLLVTDL 384
Query: 142 MSSY 131
S Y
Sbjct: 385 YSKY 388
>SB_50204| Best HMM Match : rve (HMM E-Value=6.6e-22)
Length = 800
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 313 MRKTLTACSICNAFV*TKTSPRGSM---PILKVSMNFVTTSDFEYLSVFSSSIYSLATSL 143
++ +++CSICNAF PR ++ + + ++T FEY + Y L T L
Sbjct: 520 IKDKISSCSICNAF--RNQQPRETLLPREVPGLPWQVISTDIFEY----AGHSYLLVTDL 573
Query: 142 MSSY 131
S Y
Sbjct: 574 YSKY 577
>SB_47140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 27.5 bits (58), Expect = 7.3
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 239 AHFEGLHEFRNNIGFRVLVRVFLQHIFPRDFLDVLVHSW--LQYVVQEFH 96
A F GLH + + R FL+H F RD D L+H LQ QE H
Sbjct: 151 AGFAGLHGYTAELMLRTENMTFLEHHF-RDLRDGLLHIGFSLQGRTQEKH 199
>SB_46067| Best HMM Match : rve (HMM E-Value=6e-18)
Length = 254
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 313 MRKTLTACSICNAFV*TKTSPRGSM---PILKVSMNFVTTSDFEYLSVFSSSIYSLATSL 143
++ +++CSICNAF PR ++ + + ++T FEY + Y L T L
Sbjct: 83 IKDKISSCSICNAF--RNQQPRETLLPREVPGLPWQVISTDIFEY----AGHSYLLVTDL 136
Query: 142 MSSY 131
S Y
Sbjct: 137 YSKY 140
>SB_34611| Best HMM Match : rve (HMM E-Value=6.6e-22)
Length = 875
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 313 MRKTLTACSICNAFV*TKTSPRGSM---PILKVSMNFVTTSDFEYLSVFSSSIYSLATSL 143
++ +++CSICNAF PR ++ + + ++T FEY + Y L T L
Sbjct: 529 IKDKISSCSICNAF--RNQQPRETLLPREVPGLPWQVISTDIFEY----AGHSYLLVTDL 582
Query: 142 MSSY 131
S Y
Sbjct: 583 YSKY 586
>SB_25480| Best HMM Match : rve (HMM E-Value=6.6e-22)
Length = 373
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 313 MRKTLTACSICNAFV*TKTSPRGSM---PILKVSMNFVTTSDFEYLSVFSSSIYSLATSL 143
++ +++CSICNAF PR ++ + + ++T FEY + Y L T L
Sbjct: 27 IKDKISSCSICNAF--RNQQPRETLLPREVPGLPWQVISTDIFEY----AGHSYLLVTDL 80
Query: 142 MSSY 131
S Y
Sbjct: 81 YSKY 84
>SB_16064| Best HMM Match : rve (HMM E-Value=6.6e-22)
Length = 371
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 313 MRKTLTACSICNAFV*TKTSPRGSM---PILKVSMNFVTTSDFEYLSVFSSSIYSLATSL 143
++ +++CSICNAF PR ++ + + ++T FEY + Y L T L
Sbjct: 158 IKDKISSCSICNAF--RNQQPRETLLPREVPGLPWQVISTDIFEY----AGHSYLLVTDL 211
Query: 142 MSSY 131
S Y
Sbjct: 212 YSKY 215
>SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18)
Length = 1003
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 313 MRKTLTACSICNAFV*TKTSPRGSM---PILKVSMNFVTTSDFEYLSVFSSSIYSLATSL 143
++ +++CSICNAF PR ++ + + ++T FEY + Y L T L
Sbjct: 699 IKDKISSCSICNAF--RNQQPRETLLPREVPGLPWQVISTDIFEY----AGHSYLLVTDL 752
Query: 142 MSSY 131
S Y
Sbjct: 753 YSKY 756
>SB_1297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = +1
Query: 109 TTYCSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWR 225
TT+ +CT T ++ N+ W+ + TR+ +W+
Sbjct: 5 TTWRGNVCTHTRHGAKDNMTWKWMHSHTRHGAKDNMAWK 43
>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2229
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 27 SFDVVIGKDSLMKADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYM 167
S D V+GK + + ++KLL Y+L+ + ++ K+ AR+ M
Sbjct: 250 SLDKVVGKALSVLLVCYAAQNNLLKLLKYLLEVPLVQEEKDAARQQM 296
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,172,382
Number of Sequences: 59808
Number of extensions: 368323
Number of successful extensions: 933
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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