Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M07
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    28   1.1  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    28   1.5  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.1  
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    26   6.1  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        26   6.1  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   6.1  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    25   8.0  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        25   8.0  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   8.0  

>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 615 CELRSNELGNAFSVATCDCRLCQFRGSTLAWPRCWLPLGIFPGVQKSIVHSFSFC 451
           C L  N  G+ F+    D R+C F+GS L  P       ++   Q + V + SFC
Sbjct: 326 CGLTWNHDGSQFASGGNDNRVCLFKGSDLRQP-------LYVWQQNAAVKALSFC 373


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = +1

Query: 31  YDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRFGXEILLTXTNSVSGSSAG 204
           Y   NVR  ++ LQSLP+P L        Q  S+P +NR+G   +   T ++S +++G
Sbjct: 443 YSTDNVRTDSLDLQSLPTPTLE-------QLESVP-FNRYGYVRIFPST-TLSSTASG 491


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 2   KNLRLHRSLYMIFPTLDQEP*LCNHSQVRN*PQILRTNTNHYLYQPI 142
           K L+ HR  Y+IF    Q     NH+ ++   +I++T      Y+P+
Sbjct: 90  KELKKHRDSYVIFDCPGQVELFTNHNSLQ---KIIKTLEKELDYRPV 133


>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -1

Query: 431 YSXSESFQPKGPFFPVSQAY*FFPPNXEIMYKK 333
           +      Q  G  F +S    F PP  E+ YKK
Sbjct: 320 FQAQNDMQDDGKGFGISNLKSFLPPTRELKYKK 352


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 92  NCGLGSDCRATVPGLTLEISYTGTD 18
           NC    + +    G+TLE++Y  TD
Sbjct: 412 NCSSEEEAQQVASGVTLEVAYESTD 436


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 257 CIDFKYMCPV*PPFKLIRPALEPDTELVXVR 165
           CI + Y C    PFK +R A E   E + +R
Sbjct: 35  CIAYNYECTYGQPFKRLRHAPEKYIEFLELR 65


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 518 RGQAKVEPRNWHKRQSQVATENALPN-SLLRSSQHPRLI 631
           R Q   +PR+  KRQ  V + N L    ++R  +HP +I
Sbjct: 157 RAQPNTDPRDPRKRQG-VESHNILKEVQIMRRVKHPNII 194


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 326 ELIRPVWSMALKLGH 282
           E IRP WS ALK  H
Sbjct: 118 EAIRPAWSKALKFPH 132


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 280 SQEVLVSVVLISNICALCNLLLNSSDPHLNLIR 182
           S+EVL+     ++ C L +++LN     +N++R
Sbjct: 110 SEEVLLKEASYASYCGLSSIILNGPTSPMNVMR 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,115,355
Number of Sequences: 5004
Number of extensions: 65871
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)