Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M07
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0674 + 19788198-19789817                                         33   0.22 
02_05_0294 + 27609656-27611305                                         31   0.68 
08_02_1468 - 27338052-27339506                                         31   0.90 
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982...    31   1.2  
09_06_0008 - 20168429-20170054                                         31   1.2  
04_04_0853 + 28745953-28747635                                         30   1.6  
03_02_0251 - 6821612-6823405,6823738-6823878                           29   2.7  
05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889           29   4.8  

>10_08_0674 + 19788198-19789817
          Length = 539

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 119 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 27
           W+WYE+  + CGL ++ RATV  + + I  T
Sbjct: 296 WWWYEIMILLCGLLANPRATVASMGILIQTT 326


>02_05_0294 + 27609656-27611305
          Length = 549

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 119 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 27
           W+WYE+  + CGL ++ +ATV  + + I  T
Sbjct: 323 WWWYEIMILLCGLLANPQATVASMGILIQTT 353


>08_02_1468 - 27338052-27339506
          Length = 484

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 119 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 27
           W+WYE+  + CG+ +D +A V  + + I  T
Sbjct: 244 WWWYEIMVLLCGVLADPKAAVAAMGILIQTT 274


>10_06_0029 +
           9822216-9823124,9825210-9825329,9826188-9826304,
           9826387-9826476,9826706-9826756
          Length = 428

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +1

Query: 1   QESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRFGXE 159
           +ES  A+V +   S++ PG  A  + P      DT     P SIP   RF  E
Sbjct: 156 KESILAAVRLLR-SSISPGNAAAAAAPDADAATDTDTDAAPPSIPTQTRFWQE 207


>09_06_0008 - 20168429-20170054
          Length = 541

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 119 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 27
           W+WYE+  + CG+ +D +A V  + + I  T
Sbjct: 297 WWWYEIMVLLCGVLADPKAAVAAMGVLIQTT 327


>04_04_0853 + 28745953-28747635
          Length = 560

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 119 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 27
           W+WYE+  + CGL  + +ATV  + + I  T
Sbjct: 322 WWWYEIMILLCGLLLNPQATVASMGILIQTT 352


>03_02_0251 - 6821612-6823405,6823738-6823878
          Length = 644

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 119 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 27
           W+WYE+  V  GL ++ RATV  + + I  T
Sbjct: 292 WWWYELMIVLSGLLANPRATVASMGILIQAT 322


>05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889
          Length = 493

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 128 DNGWYWYEVSAVNCGLGSDCRATVPGLTLEISYTGTDANEDS 3
           DN  Y +E    N  +G+ C+AT     +  SY G +  E+S
Sbjct: 109 DNCPYLHEPLTSNDAVGTSCKATTSNPAVSKSYVGDEMVEES 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,824,208
Number of Sequences: 37544
Number of extensions: 457240
Number of successful extensions: 1167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)