Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M07
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)              30   2.1  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_56589| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.1)            29   2.8  
SB_40041| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09)           28   6.5  
SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_59625| Best HMM Match : P19Arf_N (HMM E-Value=5.1)                  28   8.5  
SB_40917| Best HMM Match : Filament (HMM E-Value=1.7)                  28   8.5  
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)               28   8.5  
SB_8912| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  
SB_2690| Best HMM Match : Pre-SET (HMM E-Value=0.11)                   28   8.5  
SB_15195| Best HMM Match : Ribosomal_L31 (HMM E-Value=5.4)             28   8.5  
SB_14831| Best HMM Match : DUF309 (HMM E-Value=9.4)                    28   8.5  
SB_2366| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  

>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
          Length = 1167

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 467 CTIDF*TPGKIPKGNQHRGQAKVEPRNWHKRQSQV 571
           C ++F T  +IPKG+   G+AK + R   +R   +
Sbjct: 125 CNVNFRTGKQIPKGHDGEGEAKYQKRTLGRRTDTI 159


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 134  GIDNGWYWYEVSAVNCGLGSDCRATVPGLTLEISYT 27
            G   G++W  VS    G G  C  +VP   L I +T
Sbjct: 2663 GSMEGFWWSYVSMTTVGYGDRCPVSVPARILSIGWT 2698


>SB_56589| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.1)
          Length = 743

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 521 GQAKVEPRNWHKRQSQVATENALPNSLLRSSQHPRLIC-IKQLTVSSMAD 667
           G A+     W  R   VA  N++P+S +R+  HP   C +  L   SM D
Sbjct: 580 GSARRTSTPWSVRSFVVAPLNSVPSSTMRTLGHPPTGCELTHLRTRSMED 629


>SB_40041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 548 WHKRQSQVATENALPNSLLRSSQHPRLICIKQLTVSSMAD 667
           WH  +SQ+   +  P S+LRSS+    IC+ +  VS++ D
Sbjct: 32  WHY-ESQLCDRDGPPISVLRSSESDSDICLLRTGVSTVID 70


>SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +1

Query: 58  TVALQSLPSPQLTADTSYQYQPLSIPAYNRFGXEILLTXTNSVSGSSAGLMSLKGGYT 231
           +VAL+S P  +  A T Y+ QP +   Y  F   ++L        SS G  +   GY+
Sbjct: 235 SVALRSEPQARSLAYTGYELQPHTDLPYYEFKPSVILLHCIDQVRSSGGENTFVDGYS 292


>SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09)
          Length = 441

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 134 GIDNGWYWYEVSAVNCGLGSDCRATVPGLTLEI 36
           G   G++W  VS    G G  C A+VP   L I
Sbjct: 36  GSMEGFWWSYVSMTTVGYGDRCPASVPARILSI 68


>SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 110 YEVSAVNCGLGSDCRAT 60
           YEV  +NCGLG  C  T
Sbjct: 446 YEVQWINCGLGESCEPT 462


>SB_59625| Best HMM Match : P19Arf_N (HMM E-Value=5.1)
          Length = 1463

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 467  CTIDF*TPGKIPKGNQHRGQAKVEPRNWHKRQSQV 571
            C ++F T  +IPKG+   G+ K + R   +R   +
Sbjct: 1374 CNVNFRTGKQIPKGHDGEGEEKYQKRTLGRRTDTI 1408


>SB_40917| Best HMM Match : Filament (HMM E-Value=1.7)
          Length = 421

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 40  SNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRFG 153
           S VR  T A+ SLP P +  D  +  +   +  + +FG
Sbjct: 234 SEVRKTTTAILSLPDPGIHPDEQHSEENTPVEGHRKFG 271


>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
          Length = 287

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 19  SVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAY 141
           SVP    S+VR  T         Q +  +SY Y P + P+Y
Sbjct: 131 SVPSTSPSSVRSATPYYPQTQQQQSSVSSSYSYYPRAAPSY 171


>SB_8912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 467 CTIDF*TPGKIPKGNQHRGQAKVEPRNWHKRQSQV 571
           C ++F T  +IPKG+   G+ K + R   +R   +
Sbjct: 154 CNVNFRTGKQIPKGHDGEGEEKYQKRTLGRRTDTI 188


>SB_2690| Best HMM Match : Pre-SET (HMM E-Value=0.11)
          Length = 715

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 467 CTIDF*TPGKIPKGNQHRGQAKVEPRNWHKRQSQV 571
           C ++F T  +IPKG+   G+ K + R   +R   +
Sbjct: 154 CNVNFRTGKQIPKGHDGEGEEKYQKRTLGRRTDTI 188


>SB_15195| Best HMM Match : Ribosomal_L31 (HMM E-Value=5.4)
          Length = 287

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 467 CTIDF*TPGKIPKGNQHRGQAKVEPRNWHKRQSQV 571
           C ++F T  +IPKG+   G+ K + R   +R   +
Sbjct: 76  CNVNFRTGKQIPKGHDGEGEEKYQKRTLGRRTDTI 110


>SB_14831| Best HMM Match : DUF309 (HMM E-Value=9.4)
          Length = 219

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 467 CTIDF*TPGKIPKGNQHRGQAKVEPRNWHKRQSQV 571
           C ++F T  +IPKG+   G+ K + R   +R   +
Sbjct: 58  CNVNFRTGKQIPKGHDGEGEEKYQKRTLGRRTDTI 92


>SB_2366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 467 CTIDF*TPGKIPKGNQHRGQAKVEPRNWHKRQSQV 571
           C ++F T  +IPKG+   G+ K + R   +R   +
Sbjct: 154 CNVNFRTGKQIPKGHDGEGEEKYQKRTLGRRTDTI 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,611,040
Number of Sequences: 59808
Number of extensions: 517738
Number of successful extensions: 1251
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)