Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M07
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b prote...    28   5.7  
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    28   7.5  

>AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b protein
           protein 50 protein.
          Length = 532

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 338 YTLFPXLGERTNKPGKQEKRGLWVENFH*XNSHLXASKQNEKLCTIDF*TP 490
           YT+FP    R NK    +     +++ H        SK N+KLC +D   P
Sbjct: 196 YTVFP----RANKLSLNQSANQQLDSTHLSELRQVLSKSNQKLCLMDIYMP 242


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
           protein Y45F10B.10 protein.
          Length = 1592

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 590 VTHFPSPPAIAVCASFAVQPW-PGRGV 513
           +T + SPPA  VC SF ++ W PG  V
Sbjct: 845 LTCWISPPATKVCRSFTLKDWKPGNTV 871


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,386,031
Number of Sequences: 27780
Number of extensions: 379372
Number of successful extensions: 1021
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)