Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M06
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569...    31   0.79 
04_04_1360 + 32889597-32890343                                         30   1.8  
08_02_0754 - 20810449-20810517,20810965-20811036,20811145-208112...    28   7.4  
02_04_0364 + 22374735-22374749,22374903-22375076,22377858-223779...    28   7.4  
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    27   9.7  
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583...    27   9.7  
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143...    27   9.7  

>03_02_0112 +
           5689439-5689474,5689629-5689778,5690194-5690361,
           5691334-5691458,5691914-5692007,5692844-5692942,
           5693730-5693910,5694051-5694166,5694758-5694913,
           5695226-5695354,5695554-5695718
          Length = 472

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 34  DYDTFYKTTVYMKDRVNQDLYIYVLSTLHIHRSDLEG 144
           +YD F +TT    + V  D Y  VL +  I+R+D EG
Sbjct: 16  EYDKFIRTTDRKHEAVVNDFYSRVLDSGDIYRADYEG 52


>04_04_1360 + 32889597-32890343
          Length = 248

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 193 GEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSN--TTVWHYHCQSASM 339
           G  L  A+R G H          ++ WD+S+V+ S+  + V H+H + A++
Sbjct: 22  GRTLAVAERDGTHDPATGRALTGSWLWDSSLVLASHLASCVHHHHLRGATV 72


>08_02_0754 -
           20810449-20810517,20810965-20811036,20811145-20811252,
           20811326-20811378,20811401-20811514,20812833-20812962
          Length = 181

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +1

Query: 421 VVPLLKERRGEWY--WFVHKQLVTRYYMERLSNGFGEIGE-LSGN 546
           V+P + E  G  Y  WFV++ L+ +   E L+NGF  + + ++GN
Sbjct: 135 VLPNILELVGLGYSGWFVYRYLLFKENREELANGFDALKKRITGN 179


>02_04_0364 +
           22374735-22374749,22374903-22375076,22377858-22377935,
           22379270-22380407,22380507-22380901,22382230-22382416,
           22382872-22382942,22383705-22383755
          Length = 702

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 112 TLHIHRSDLEGYAIPPIYEVLPEYFNNGEILHTAQ 216
           T+ +  SD E  A P     LP+  NN  +L++ Q
Sbjct: 382 TMRVFESDFEAKAAPEFGNTLPKSSNNNSMLNSEQ 416


>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 582 YMVSKIVAFVYDVTTKFTDFTKSIRKSFHIVTCYKLFVY 466
           +MVS+++  VYD   K    TKS R S  I+   + ++Y
Sbjct: 805 FMVSRVINEVYDDICKNGGRTKSRRNSQKIIDTGEYYIY 843


>02_01_0783 +
           5835517-5835861,5835989-5836060,5836140-5836220,
           5836293-5836490,5836576-5836647,5836803-5836889,
           5836986-5837084,5837191-5837274,5837351-5837437,
           5837578-5837649,5837912-5838025,5838127-5838214,
           5838293-5838388,5838507-5838694
          Length = 560

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/96 (18%), Positives = 37/96 (38%)
 Frame = +1

Query: 265 YKWDNSVVIRSNTTVWHYHCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVVPLLKER 444
           Y W ++++I+     W +H    S++ +L    L  H+      + + L      +    
Sbjct: 366 YPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAI---N 422

Query: 445 RGEWYWFVHKQLVTRYYMERLSNGFGEIGELSGNVV 552
            G W W        +Y+       FG+  + +GN +
Sbjct: 423 NGNWMWLSCSSFFYQYHRIYSPTSFGKKYDPNGNYI 458


>01_05_0195 -
           19111983-19112477,19112646-19113950,19114053-19114322,
           19118884-19118950,19119229-19119284,19119530-19119590,
           19120181-19120297,19120570-19120682,19120774-19120848,
           19121464-19122045,19122056-19122271,19122372-19122497,
           19126152-19126190,19126266-19126360,19126423-19126962,
           19127102-19127327,19127385-19127437,19127534-19127701,
           19128353-19128707,19128785-19128876,19129891-19129993
          Length = 1717

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 509 LMDLVKSVNLVVTS*TKATILDTMYHNGIPYPVRPNHLH 625
           L+D+  S + +V     A ++ T+ H+ + YP  PN +H
Sbjct: 100 LVDVSLSPHNIVVHSHMAVLVRTLKHSKVAYPQCPNEMH 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,312,608
Number of Sequences: 37544
Number of extensions: 355970
Number of successful extensions: 907
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)