Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M06
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative ...    29   3.5  
At3g14920.1 68416.m01886 expressed protein                             29   3.5  
At3g62890.1 68416.m07065 pentatricopeptide (PPR) repeat-containi...    28   6.1  
At3g57420.1 68416.m06393 expressed protein contains Pfam domain ...    28   6.1  
At3g19820.2 68416.m02511 cell elongation protein / DWARF1 / DIMI...    27   8.1  
At3g19820.1 68416.m02510 cell elongation protein / DWARF1 / DIMI...    27   8.1  

>At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative
           similar to GT-2 factor [Arabidopsis thaliana GI:416490
          Length = 619

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 352 HDYSLNAHYYYHHLTYNKWLGGDVVPLLKERRGEWYWF 465
           HD S N H ++HH   + W   +V+ LL+ R     WF
Sbjct: 88  HDDSDNHHQHHHH---HPWCSDEVLALLRFRSTVENWF 122


>At3g14920.1 68416.m01886 expressed protein 
          Length = 609

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
 Frame = +1

Query: 319 HCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVVPLLKERRGE-----WYWFVHKQLV 483
           HC S   S  + ++   +        +  WL G  V +L+    E       W V K  V
Sbjct: 102 HCSSREFSKIVLEFKSTSQGRQFDRIFGVWLDG--VEILRSCTAEPRPNGIVWSVEKD-V 158

Query: 484 TRYYMERLSNGFGEIGELSGNVVNEGYNFGYHV 582
           T+Y+   + N    +    GN++++ Y   YHV
Sbjct: 159 TKYHSLLVKNETQILSVYLGNLIDKTYTGVYHV 191


>At3g62890.1 68416.m07065 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 558

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 570 WIPCIITVYHIQLDLIISTSII 635
           W+   I  YH+++D+++ T++I
Sbjct: 220 WVHAYIDKYHVEIDIVLGTALI 241


>At3g57420.1 68416.m06393 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 765

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 37  YDTFYKTTVYMKDRVNQDLYIYVLSTLHIHR 129
           Y   +KT V +  R N DLY+      HI++
Sbjct: 534 YGRIFKTVVILSSRKNSDLYVQEAKLDHIYK 564


>At3g19820.2 68416.m02511 cell elongation protein / DWARF1 /
           DIMINUTO (DIM) identical to GB:S71189 [SP|Q39085] from
           [Arabidopsis thaliana]; contains Pfam FAD binding domain
           PF01565
          Length = 561

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +1

Query: 310 WHY-HCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVVPLLKERRGEWYWF 465
           W Y H Q+A       +Y     YY+ H     W G  ++P      G+ +WF
Sbjct: 312 WFYQHAQTALKKGQFVEYIPTREYYHRHTRCLYWEGKLILPF-----GDQFWF 359


>At3g19820.1 68416.m02510 cell elongation protein / DWARF1 /
           DIMINUTO (DIM) identical to GB:S71189 [SP|Q39085] from
           [Arabidopsis thaliana]; contains Pfam FAD binding domain
           PF01565
          Length = 561

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +1

Query: 310 WHY-HCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVVPLLKERRGEWYWF 465
           W Y H Q+A       +Y     YY+ H     W G  ++P      G+ +WF
Sbjct: 312 WFYQHAQTALKKGQFVEYIPTREYYHRHTRCLYWEGKLILPF-----GDQFWF 359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,308,456
Number of Sequences: 28952
Number of extensions: 303472
Number of successful extensions: 799
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)