Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_M05
(522 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 29 0.32
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 29 0.32
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 28 0.73
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 27 1.7
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 27 2.2
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.0
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 26 3.9
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 26 3.9
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 5.2
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 25 5.2
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 25 6.8
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 25 6.8
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 25 6.8
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 25 9.0
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 9.0
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 29.5 bits (63), Expect = 0.32
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 215 HYVPKHVYPHQHRRIYQASTPGCS 286
H+VPKH++PH R+ + +T S
Sbjct: 235 HFVPKHMFPHLEDRLAELNTSDIS 258
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 29.5 bits (63), Expect = 0.32
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -2
Query: 425 LKLESNSDSAGEHKAFGGHEHDTWRHLWYFHPVVVGSETVFFIFNRN 285
L E N D + KAF HE R L+++HP ++G+ V F+ RN
Sbjct: 119 LNYEKNYDYFKKLKAF--HES---RGLYFYHPPIIGNRPVDFLRLRN 160
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 28.3 bits (60), Expect = 0.73
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 275 ALKLGRYVDVDG-DRRVWGHNGGVL 204
AL L +++D D D RVW HNG V+
Sbjct: 125 ALSLPKWIDEDNSDYRVWIHNGEVI 149
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 292 LKIKNTVSLPTTTGWKYHRCLHVSCSCPPNA----LCSPALSEFDSSFK 426
LK KN T W +RCL ++ CPP A LCS ++ + +F+
Sbjct: 441 LKHKNPQVKTETLRW-LNRCLQLTDVCPPRASLETLCSLCVTLINDTFE 488
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 26.6 bits (56), Expect = 2.2
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -2
Query: 98 PILLDIGIIVVYLFTVYLLFIGIV 27
P+LLD+G+ +VY F + ++ ++
Sbjct: 387 PVLLDLGVAMVYFFIKFDIYFTLI 410
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = -2
Query: 443 SKFGQYLKLESNS-DSAGEHKAFGGHEHD--TWRHLWYFHPVVVGSETVFFIFNRNYNQA 273
S +G Y+ + S S G G E+ TWR L++ +V G + F+F A
Sbjct: 204 SNWGMYMFIFMCSVASVGSPMGTGVAENPKLTWRWLYWIDVIVGGFFIILFVFTPETLPA 263
Query: 272 LKLGRY 255
+ + RY
Sbjct: 264 IVIQRY 269
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 344 WYFHPVVVGSETVFFIFNRNYNQALKLGRYVDV 246
+YFHP V F+++R NQA K +V
Sbjct: 265 YYFHPFTVLETDENFLYSRPLNQAEKTATSTNV 297
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 3.9
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 197 GC--LKHLHYVPKHVYPHQHRRIYQASTPGCSFC*K*RTPSHSQLPLGGSTTDVSMCRVR 370
GC L H + + Y Q IY+ S +F R + S L T+D+SMC R
Sbjct: 642 GCSELHHRLKLQREEYERQQNHIYKLSDRISNF----REKAWSTEHLEHLTSDMSMCEKR 697
Query: 371 VLQTL 385
+ Q L
Sbjct: 698 IDQVL 702
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 19 SFYTIPIKSKYTVNKYTTIIPISKS 93
S T+P S T+N YTT +P S
Sbjct: 348 SVTTVPSNSPATLNSYTTSVPSGMS 372
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 360 VVFVSSKRFMFTGTVGV*F*FQILSEFACSQFQSTPSGFTNEGLFSKT 503
+ F+S K + T V F ++LSE + Q+ P N+GL KT
Sbjct: 537 IEFISVKTEGYLMTDLVLFVKRLLSEAFVEKIQNGPKHLMNKGLIEKT 584
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 416 ESNSDSAGEHKAFGGHEHDTWRHLWYFHPV 327
E NSDS+ AF E +W+H P+
Sbjct: 150 EYNSDSSSTDPAFELKEDQSWKHSSILRPL 179
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 285 VSVENKEHRLTPNYHWVEVPQMSPCVVFVSSK 380
+++ E L NY + +VP S CV +S +
Sbjct: 49 IAITRSESNLQSNYKYDQVPMYSICVFCLSGQ 80
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 6.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -1
Query: 75 YCCVFIYCILTFYRYS 28
Y C+ ++CI++FY S
Sbjct: 9 YFCILLFCIISFYLQS 24
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 156 LTVVRSYVPCVMC 194
LTVV ++ PCVMC
Sbjct: 244 LTVVMTHEPCVMC 256
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 400 LSEFDSSFKYCPNLLVHNFKVRPLGSPMRDYFP 498
LS S+ + ++ NFKVRPL SP+R P
Sbjct: 105 LSRSSSNVRQQRDIPKQNFKVRPL-SPLRGQSP 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,570
Number of Sequences: 5004
Number of extensions: 53473
Number of successful extensions: 148
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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