Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_M05
(522 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1010 + 33477878-33478446,33478709-33478834,33478905-334791... 31 0.74
08_02_0873 + 22100124-22100810 29 3.0
10_08_0365 + 17224777-17224852,17224949-17224989,17225175-172252... 28 4.0
04_04_0503 - 25701050-25701343,25701431-25701528,25701629-257016... 28 5.2
01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271... 28 5.2
05_01_0539 + 4653028-4653158,4654329-4654973,4655323-4655448,465... 27 6.9
03_05_0829 + 28025760-28025846,28026366-28026473,28026721-280267... 27 6.9
08_02_1218 - 25359462-25359983 27 9.1
01_01_0920 + 7264498-7264573,7264705-7264745,7265339-7265408,726... 27 9.1
>02_05_1010 +
33477878-33478446,33478709-33478834,33478905-33479190,
33479293-33479484,33479641-33479870,33480379-33480718,
33481673-33481789,33481940-33482014
Length = 644
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 234 SIPINIDVSTKLQRLVVVSVENKEHRLTPNYHWV 335
SI + ++VS + +VV+S+ KEH P + WV
Sbjct: 91 SIEVLVNVSQIVAAIVVLSLSRKEHPQAPLFEWV 124
>08_02_0873 + 22100124-22100810
Length = 228
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 337 KYHRCLHVSCSCPPNALCSPAL 402
K H CLH++C C A+C P L
Sbjct: 207 KSHGCLHITCRC---AICDPRL 225
>10_08_0365 +
17224777-17224852,17224949-17224989,17225175-17225244,
17225338-17225486,17225940-17226035,17226481-17226551,
17227077-17227138,17227311-17227374,17227463-17227547,
17227631-17227757,17228241-17228374,17228808-17229122
Length = 429
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +1
Query: 337 KYHRCLHVSCSCPPNALCSPALSEFDSSFKYCPNL 441
KY R P LC SEF S F YC +L
Sbjct: 224 KYDRISEKKMLTPAEVLCKSYPSEFTSYFHYCRSL 258
>04_04_0503 -
25701050-25701343,25701431-25701528,25701629-25701689,
25701772-25701842,25701922-25702048,25702160-25702244,
25702346-25702409,25702732-25702793,25703214-25703284,
25703700-25703795,25703960-25704108,25704196-25704265,
25704483-25704523,25704668-25704743
Length = 454
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Frame = +1
Query: 337 KYHRCLHVSCSCPPNALCSPALSEFDSSFKYCPNLLVHNFKVRP----LGSPMRDYFPRH 504
KY R P LC SEF S F YC +L F+ +P L RD F R
Sbjct: 224 KYDRISEKKMLTPVEVLCKSYPSEFVSYFHYCRSL---RFEDKPDYSYLKKLFRDLFIRE 280
Query: 505 SITLPF 522
L +
Sbjct: 281 GYQLDY 286
>01_01_0335 -
2706916-2706984,2707062-2707825,2710014-2710053,
2710105-2710173,2710268-2710336
Length = 336
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 368 RVLQTLYVHRHCRSLILVSNIVRICLF 448
R+++T +VHR + VSN+ R C +
Sbjct: 168 RIMETFFVHRFSHATSPVSNVFRNCAY 194
>05_01_0539 +
4653028-4653158,4654329-4654973,4655323-4655448,
4655537-4655813,4655916-4656143
Length = 468
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 234 SIPINIDVSTKLQRLVVVSVENKEHRLTPNYHWV 335
S+ + ++VS + + V+SV EH +P + WV
Sbjct: 161 SVELVVNVSQIIAAICVLSVSRNEHPHSPLFEWV 194
>03_05_0829 +
28025760-28025846,28026366-28026473,28026721-28026752,
28026823-28026873,28027528-28027589,28027663-28027924,
28028634-28028899,28029138-28029232,28029772-28029948
Length = 379
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 193 AGLSKTPPLCPQTRLSPSTSTYLPSFNA 276
AG+ + PL P +RLS T T SFN+
Sbjct: 351 AGVDEEAPLIPSSRLSYVTRTQTGSFNS 378
>08_02_1218 - 25359462-25359983
Length = 173
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 419 LESNSDSAGEHKAFGGHEHDTWRHLWY 339
LE N D A A G H TWRH++Y
Sbjct: 104 LEMNDDEAA---ALGCHCRGTWRHVFY 127
>01_01_0920 +
7264498-7264573,7264705-7264745,7265339-7265408,
7265500-7265648,7266143-7266238,7266326-7266396,
7266510-7266571,7266651-7266714,7267608-7267692,
7267777-7267903,7268016-7268080,7268739-7268796,
7268927-7269066,7269624-7269693,7269910-7269981,
7270188-7270234,7270468-7270566
Length = 463
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 337 KYHRCLHVSCSCPPNALCSPALSEFDSSFKYCPNL 441
KY + S P LC EF S F YC +L
Sbjct: 224 KYDKICEKKISTPIEVLCKSCPVEFASYFHYCHSL 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,567,828
Number of Sequences: 37544
Number of extensions: 325883
Number of successful extensions: 838
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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