Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M05
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              36   0.020
SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)               29   2.3  
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                28   4.1  
SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0)                     28   4.1  
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_43154| Best HMM Match : KCl_Cotrans_1 (HMM E-Value=3.2)             28   5.4  
SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   7.1  
SB_55983| Best HMM Match : RhoGEF (HMM E-Value=0.0046)                 27   7.1  
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)              27   9.4  
SB_34664| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 147 YYVNEIYCWFV*FLVFTYTFRYRYYCCVFIYCILTFYRY 31
           YY    YC++     + Y + Y YYCC + YC   ++ Y
Sbjct: 477 YYYCYCYCYYY---CYYYCYCYCYYCCYYCYCYYYYHHY 512



 Score = 35.5 bits (78), Expect = 0.027
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 147 YYVNEIYCWFV*FLVFTYTFRYRYYCCVFIYCILTFYRYSIETT 16
           YY    YC++  +  + Y + + YYCC +  C  T    +  TT
Sbjct: 489 YYYCYCYCYYCCYYCYCYYYYHHYYCCYYCCCSCTATTATATTT 532


>SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)
          Length = 473

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 322 TTTGWKYHRCLHVSCSCPPNALCSPALSEFDSSFKYCPNLL 444
           TT   ++H C H + S P  +L +P     D+ + +C +L+
Sbjct: 48  TTADTRHHHCRHPAPSLPAPSLPAPGTITADTWYHHCRHLV 88


>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 300

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 159 LRCLYYVNEIYCWFV*FLVFTYTFRYRYYCCVFIYCILTFYRYSI 25
           L C   V  I C+ V  L+  Y    +Y+C  F+ C     RY++
Sbjct: 154 LLCRCVVMSICCYDV-MLLCRYNVTSKYFCVDFLICCYVVCRYAV 197


>SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 320

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 220 CPQTRLSPSTSTYLPSF-NAWL*FLLKIKNTVSLPTTTGWKYHRCLHVSCSCPPNALCSP 396
           CP+T L P   T   ++ N  L  L   K+   +      +Y+ C  V+C+ PP + C P
Sbjct: 94  CPKT-LKPVYGTDNKNYDNECLLKLAACKSNTRILIAGFGRYNPCKDVNCTSPPYSSCRP 152



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 220 CPQTRLSPSTSTYLPSF-NAWL*FLLKIKNTVSLPTTTGWKYHRCLHVSCSCPPNALCSP 396
           CP+T L P   T   ++ N  L  L   K+   +      +Y+ C  V+C+ PP + C P
Sbjct: 208 CPKT-LKPVYGTDNKNYDNECLLKLAACKSNTRILIAGFGRYNPCKDVNCTSPPYSSCRP 266


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 220  CPQTRLSPSTSTYLPSF-NAWL*FLLKIKNTVSLPTTTGWKYHRCLHVSCSCPPNALCSP 396
            CP+T L P   T   ++ N  L  L   K+   +      +Y+ C  V+C+ PP + C P
Sbjct: 1068 CPKT-LKPVYGTDNKNYDNECLLKLAACKSNTRILIAGFGRYNPCKDVNCTSPPYSSCRP 1126


>SB_43154| Best HMM Match : KCl_Cotrans_1 (HMM E-Value=3.2)
          Length = 337

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
 Frame = +1

Query: 28  TIPIKSKYTVNKY---------TTIIPISKSIGKNQKLYKPT 126
           T+PI  +Y +N Y         TTII   K+  K  + Y+PT
Sbjct: 285 TVPISLRYNINNYIGIGFGPQITTIISSKKTSNKTTRYYQPT 326


>SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 147 YYVNEIYCWFV*FLVFTYTFRYRYYCCVF 61
           +Y    Y ++  +  + Y + Y YYCC F
Sbjct: 8   HYYYYYYYYYYYYYYYYYYYYYYYYCCYF 36


>SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 879

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = +1

Query: 361 SCSCPPN----ALCSPALSEFDSSFKYCPNLLVHNFKVRPLGSPMR---DYFP 498
           SC C P+    ++CSP+ +  D     C    V +  + P+ SP R   D FP
Sbjct: 75  SCRCVPHHVLMSMCSPSRAHVDVFLTTCSCRCVSHHVLMPMCSPSRAHVDVFP 127


>SB_55983| Best HMM Match : RhoGEF (HMM E-Value=0.0046)
          Length = 357

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 192 TLRMVRKTSQQLRCLYYVNEIYCWF--V*FLVFTYTFRYRYYCC 67
           TLR VR TS+ +RC   ++++YC    V + +       RY CC
Sbjct: 242 TLRDVRYTSRDVRCT--LHDVYCTLRDVRYTLRDVRCTSRYVCC 283


>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
          Length = 1977

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 362  RVRV-LQTLYVHRHCRSLILVSNIVRICLFTISKYALW 472
            R+R+ + + Y   HC+ +   +  VRICL+ +S Y ++
Sbjct: 1607 RIRLYIVSAYTSIHCQCVYGYTLSVRICLYIVSAYNIY 1644


>SB_34664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 415 NQTPTVPVNIKRLEDTNTTHGDICGTST 332
           N  PTV VN + +E+T  T  D  G+ST
Sbjct: 12  NGHPTVEVNTRTVEETKKTSVDSRGSST 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,345,548
Number of Sequences: 59808
Number of extensions: 388652
Number of successful extensions: 1151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)