Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M05
         (522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   5.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 209 HLHYVPKHVYPHQHRRIYQASTP 277
           H+H  P H + H     +Q STP
Sbjct: 425 HIHATPHHHHSHAATPHHQHSTP 447


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 322 LGVRRCSLFSTETTTRR*SLVDTSMLMGIDVFGDIMEVF 206
           LGV      ST+    + SL   S L  +D F  +  VF
Sbjct: 279 LGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSVCTVF 317


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 162 VVRSYVPCVMCRVV*NTSIMSPNTSIP--INIDVSTKL 269
           +++ Y+PC M  +V   S     +++P  +++ V+T L
Sbjct: 245 LIQIYIPCCMLVIVSWVSFWLDQSAVPARVSLGVTTLL 282


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 162 VVRSYVPCVMCRVV*NTSIMSPNTSIP--INIDVSTKL 269
           +++ Y+PC M  +V   S     +++P  +++ V+T L
Sbjct: 245 LIQIYIPCCMLVIVSWVSFWLDQSAVPARVSLGVTTLL 282


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 322 LGVRRCSLFSTETTTRR*SLVDTSMLMGIDVFGDIMEVF 206
           LGV      +T+ T  + SL   S +  IDV+     VF
Sbjct: 248 LGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVF 286


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 407 SLILVSNIVRICLFTI 454
           +LIL+ NI+ IC  T+
Sbjct: 81  NLILLQNIIDICWITM 96


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 360 VVFVSSKRFMFTGTVGV*F*FQILSEFACSQF 455
           V FVS    +F  T G  + FQ+L  +A S F
Sbjct: 422 VCFVSYLIGLFCITEGGMYVFQLLDSYAVSGF 453


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 360 VVFVSSKRFMFTGTVGV*F*FQILSEFACSQF 455
           V FVS    +F  T G  + FQ+L  +A S F
Sbjct: 475 VCFVSYLIGLFCITEGGMYVFQLLDSYAVSGF 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,554
Number of Sequences: 438
Number of extensions: 4161
Number of successful extensions: 26
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)