Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M04
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      71   9e-13
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      68   6e-12
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      67   9e-12
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)                       31   0.69 
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_12548| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_59806| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_25283| Best HMM Match : LIM (HMM E-Value=1.1)                       29   3.7  
SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_16888| Best HMM Match : ResIII (HMM E-Value=2.6)                    28   4.8  
SB_48805| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32)                 28   6.4  
SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42)                     28   6.4  
SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9)                  28   6.4  
SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_45255| Best HMM Match : Ribosomal_L36 (HMM E-Value=4.2)             27   8.5  
SB_40387| Best HMM Match : GrpE (HMM E-Value=0)                        27   8.5  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 70.5 bits (165), Expect = 9e-13
 Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 8/150 (5%)
 Frame = -1

Query: 572 MVVILPDKLEGLSSVLEKAAEKGLIEDVFRLEPAGR--DVNLEMPKFEVKSGLDLKNLFP 399
           MV++LPD+ EGL+   E+      + D+F    + R  DV + +PKF++ S   L     
Sbjct: 192 MVLVLPDETEGLAR-FEQDLTHDKMTDIFNSVSSQRPADVEVYIPKFKMTSEFKLNEALQ 250

Query: 398 KLGVSKIFNEPATEI----VKSGSVVVSEAFQEAFIKVDEEGATAGAFTGLIAVPISSHY 231
           +LG+ K+F++ A +     +    + VS    +AF++V+EEG  A A T   A+ +    
Sbjct: 251 ELGMKKMFDQAAADFTGISLPPEHLFVSAVLHKAFVEVNEEGTEAAAATA--AIMMMRCA 308

Query: 230 VPPPPMDFKVDHPFAYLILY--KDIIIFAG 147
           +   P+ F+ DHPF +LI +     ++F G
Sbjct: 309 IMREPLVFRADHPFLFLIQHCKSKCVLFMG 338


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 67.7 bits (158), Expect = 6e-12
 Identities = 44/147 (29%), Positives = 80/147 (54%), Gaps = 5/147 (3%)
 Frame = -1

Query: 572 MVVILPDKLEGLSSVLEKAAEKGLIEDVFRLEPAG-RDVNLEMPKFEVKSGLDLKNLFPK 396
           MVV+LP++++GL  +     ++ L E +  L  +   +V + +PKF +     L      
Sbjct: 229 MVVLLPNEVDGLGKLESSLNKETLQEAMTSLRNSHPEEVEVTLPKFTLTQEFSLGETLKG 288

Query: 395 LGVSKIFNEPATEI--VKSGSVVVSEAFQEAFIKVDEEGATAGAFTGLIAVPISSHYVPP 222
           +G S +F+    ++  + +  +VVSE   +AF++V+EEG  A A TG + + + S  +P 
Sbjct: 289 MGASDLFSPGKADLSGISAAPLVVSEVVHKAFVEVNEEGTIAAAATG-VGIMLMS--MPM 345

Query: 221 PPMDFKVDHPFAYLILYKD--IIIFAG 147
            P+ F  +HPF +LI + D   ++F G
Sbjct: 346 NPV-FYANHPFLFLIRHNDTGAVLFMG 371


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 5/150 (3%)
 Frame = -1

Query: 581 DFRMVVILPDKLEGLSSVLEKAAEKGLIEDVFRLEPAGRDVNLEMPKFEVKSGLDLKNLF 402
           D  MV+ILP++  G+ S LEK+ +  ++E   RL      V + +PKF +   L+L++L 
Sbjct: 196 DTAMVIILPEEPSGIFS-LEKSIDVEIMEKWRRLM-INTTVEVSIPKFRLSQKLELRSLL 253

Query: 401 PKLGVSKIFNEPATE---IVKSGSVVVSEAFQEAFIKVDEEGATAGAFTGLIAVPISSHY 231
             LGVS IF+    +   I  +  + VS A  +A I+V+E G  A A TG++    S   
Sbjct: 254 QDLGVSDIFDSRKADLSGISAAKGLYVSSAIHKAHIEVNERGTVAAATTGVVMAKRSLDM 313

Query: 230 VPPPPMDFKVDHPFAYLILYK--DIIIFAG 147
                  F  DHPF + I +K    I+F G
Sbjct: 314 NEV----FYADHPFLFSIHHKPSSAILFLG 339


>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
          Length = 2996

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -1

Query: 581  DFRMVVILPDKLEGLSSVLEKAAEKGL--IEDVFRLEPAGRDVNLEMPKFEVKSGLDLKN 408
            DF  + I    +  +S +    A+K L  ++DVFR +    +V+ +   F  K G D +N
Sbjct: 2906 DFPAITICNQNIMRMSKINGTEAQKYLDELDDVFRKDIKKENVSYDAETFVNKYGHDWEN 2965

Query: 407  LFPKLGVSKIF 375
            +F  +  S +F
Sbjct: 2966 MFENIPYSCMF 2976


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
 Frame = +1

Query: 334 TTEPLLTISVAGS----LNIFETPSFGNKFLRSNPLFTSNFGISKFTS-LPAGSSLNTSS 498
           TT  +LT S+  S     +   TPS  +    +N   T    ++  +  LP  +S+ TSS
Sbjct: 424 TTTSVLTSSMESSSMATTSTTSTPSLESSMTSNNTTLTLAEAVATSSPVLPTTTSVLTSS 483

Query: 499 MSPFSAAFSKTDDKPSSLSGRMTT 570
           M P S A + T   P  L   MTT
Sbjct: 484 MEPSSMATTSTTSTP--LESSMTT 505


>SB_12548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 248 PISSHYVPPPPMDFKVDHPFAYLILYKD 165
           P  S + PPPP DF+ D  F Y  L  D
Sbjct: 144 PGFSSFTPPPPPDFRSDPDFGYAPLNDD 171


>SB_59806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 572 MVVILPDKLEGLSSVLEKAAEKGLIEDVFRLEPAGRDVNLE 450
           MV  +   ++ LS VL    E G+++DV   +P+ RDV  E
Sbjct: 294 MVEGMQRSMQCLSIVLNVTTEDGMVDDVEIFDPSKRDVEKE 334


>SB_25283| Best HMM Match : LIM (HMM E-Value=1.1)
          Length = 1097

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 378 IQRASDRDRQEWLCGSV-RSISGSIYQSRRRG 286
           I+RA  R  + WLCG V  +  G +Y+SR+ G
Sbjct: 322 IKRAIPRSTRVWLCGRVIVTHEGKLYRSRQDG 353


>SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 330 HYHRATLDDLCRWLVEYFRNSKLWK*VFKVQPAFHFEFWH 449
           H H    DDL RW+  + ++ K ++    +   FHF F++
Sbjct: 52  HIHVYPCDDL-RWVASFMKDGKTFEEAIALLRRFHFPFFY 90


>SB_16888| Best HMM Match : ResIII (HMM E-Value=2.6)
          Length = 811

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 378 IQRASDRDRQEWLCGSV-RSISGSIYQSRRRG 286
           I RA  R  + WLCG V  +  G +Y+SR+ G
Sbjct: 132 INRAIPRSTRVWLCGRVIVTHEGKLYRSRQDG 163


>SB_48805| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32)
          Length = 427

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 409 FLRSNPLFTSNFGISKFTSLPAGSSLNTSSMSP-FSAAFSKTDDKPSSLSGRMTTIR 576
           F R N ++  ++   K +++P  SS++TSS+SP FS   S T       S R    R
Sbjct: 253 FPRGNVIYDRDYYGRKPSAVPYISSVSTSSLSPDFSPQASPTKSTEGDYSRRSRITR 309


>SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42)
          Length = 1088

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 378 IQRASDRDRQEWLCGSV-RSISGSIYQSRR 292
           I R + R  + WLCG V  +  G +Y+SRR
Sbjct: 449 INRTNPRSTRMWLCGHVIVTHEGKLYRSRR 478


>SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9)
          Length = 748

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 378 IQRASDRDRQEWLCGSV-RSISGSIYQSRRRG 286
           I RA  R  + WLCGSV  +  G +Y+S + G
Sbjct: 382 INRAMPRSTRVWLCGSVIVTHEGKLYRSGQDG 413


>SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 378 IQRASDRDRQEWLCGSV-RSISGSIYQSRRRG 286
           I RA  R  + WLCGSV  +  G +Y+S + G
Sbjct: 382 INRAMPRSTRVWLCGSVIVTHEGKLYRSGQDG 413


>SB_45255| Best HMM Match : Ribosomal_L36 (HMM E-Value=4.2)
          Length = 150

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 389 VSKIFNEPATEIVKSGSVVVSEAFQEAFIKVDEE 288
           + K FN     +     VV+ +AF E F   DEE
Sbjct: 112 IKKSFNAALKHVKPDAVVVLGDAFNEGFTATDEE 145


>SB_40387| Best HMM Match : GrpE (HMM E-Value=0)
          Length = 328

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
 Frame = -1

Query: 515 AEKGLIEDVFRLEPAGRDVNLEMPKFEVKSGLDLKNLFPKLGVS-----KIFNEPATEIV 351
           A +G  +D+  +          +PK E+     LKNLF  L ++     K+FN+   E +
Sbjct: 214 AIRGFSKDLLEIADILEKATTSVPKEELDKNSHLKNLFEGLTMTEAQLHKVFNKNGLEKM 273

Query: 350 KSGSVVVSEAFQEAFIKVD 294
                  +  F EA  + D
Sbjct: 274 NPEGEKFNPHFHEAVFQFD 292


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
 Frame = -1

Query: 575  RMVVILPDKLEGLSSVLE-KAAEKGLIEDVFRLEPAGRDVNLEMPKFEVKSGLDLKNLFP 399
            R++V++ D+ E  SS+++ KAA  GLI+D  RL      +  +  + E+KS   + +   
Sbjct: 5697 RVMVVISDR-ESDSSLMDVKAAVSGLIQDNIRLISVA--LGGQGNENELKSVAPVPDAVI 5753

Query: 398  KLGVSKIFNEPATEIVK 348
             +G++   ++   EIVK
Sbjct: 5754 SVGINDSSSKAGGEIVK 5770


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,237,657
Number of Sequences: 59808
Number of extensions: 310707
Number of successful extensions: 984
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)