Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_M03
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 31 0.098
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.40
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.52
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc... 27 1.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.1
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb... 26 2.8
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 2.8
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 3.7
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 4.9
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos... 25 6.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 8.5
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 8.5
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 31.1 bits (67), Expect = 0.098
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = -3
Query: 417 SSSDPSAQW----STPSHMRSALTQNSRCLHLNSLHPCSGMGSLTAVITNLKPFASVPQL 250
SSSD Q + P ++R +T+ L C G G LTA T+LK A+ Q
Sbjct: 658 SSSDNKEQLCLLNTLPWNVRGVITETEEN-KLVYFESCDGKGILTAAHTSLKHPAAAYQK 716
Query: 249 SVTYLSVTKLLRVNRAP 199
++ V LRV AP
Sbjct: 717 DDNFILVNDHLRVTIAP 733
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 29.1 bits (62), Expect = 0.40
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -3
Query: 489 PAATTTSHALPAPVPPFSGQRAAVSSSDPSAQWSTPSHMRSALTQNSRCLHL-NSLHPC 316
P+A T + PA P F+ ++ S DPS S S + S QNS L H C
Sbjct: 302 PSANTVGNPSPADTPGFNVP--SLISDDPSVSSSLSSSVASLSLQNSNILSFCKDQHGC 358
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.52
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = -3
Query: 501 SSEDPAATTTSHALPAPVPPFSGQRAAVSSSDPSAQWSTPSHMRSALTQNSRCLHLNSLH 322
SS P+ ++TS + + P S + +SSS + S+PS S+ T S L +S+
Sbjct: 183 SSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSS-TLTSSSLSTSSIP 241
Query: 321 PCSGMGSLTA 292
S S T+
Sbjct: 242 STSSSSSSTS 251
>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 27.5 bits (58), Expect = 1.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 239 YVTDNWGTDANGFKLVITAVKDPI 310
Y T NW T+ NG ++I ++ P+
Sbjct: 94 YATRNWQTNENGIVIIIQSMSHPL 117
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.1
Identities = 20/80 (25%), Positives = 33/80 (41%)
Frame = -3
Query: 477 TTSHALPAPVPPFSGQRAAVSSSDPSAQWSTPSHMRSALTQNSRCLHLNSLHPCSGMGSL 298
TTS ++P P + +SSS P STP + T S L+ ++ + + +
Sbjct: 497 TTSTSVPYTSTPVTSSNYTISSSTPVT--STPVTTTNCTTSTS-VLYTSTPVTSTPLATT 553
Query: 297 TAVITNLKPFASVPQLSVTY 238
+ P+ S P S Y
Sbjct: 554 NCTTSTSVPYTSTPVTSSNY 573
Score = 24.6 bits (51), Expect = 8.5
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Frame = -3
Query: 477 TTSHALPAPVPPFSGQRAAVSSSDPSAQWSTPSHMRSALTQNSRCLHLNS--LHPCSGMG 304
TTS ++P P + +SSS P STP + T S L+ ++ P S
Sbjct: 556 TTSTSVPYTSTPVTSSNYTISSSTPVT--STPVTTTNCTTSTS-VLYTSTPITSPNSTSS 612
Query: 303 SLTAVITN-LKPFASVPQLSVTYLSVTKLLRVNRAPT 196
S T V N P VT + L NR T
Sbjct: 613 SSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTST 649
>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 155 PAKVDLSCRNTKQQVGALFTRSNFVTL-KYVTDNWG 259
P KV +SC++ K +G F R +L Y TD G
Sbjct: 99 PTKVVVSCKSNKGSIGPRFVRELEGSLSSYPTDTLG 134
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 2.8
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Frame = -3
Query: 501 SSEDPAATTTSHALPAPVPPFSGQRAAVSSSDPSAQWSTPSHMRSALTQNSRCL-HLNSL 325
SS ++TTS + A S ++ SSS S+ S+ S +S+ +SR H +
Sbjct: 124 SSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSHRTTS 183
Query: 324 HPCSGMGSLTAVITNLKPFASVPQLSVTYLSVT 226
H S T + + + TY + T
Sbjct: 184 HKSSSYRPTVFPYTTISHYNITNATNGTYCNGT 216
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 3.7
Identities = 19/76 (25%), Positives = 39/76 (51%)
Frame = -3
Query: 501 SSEDPAATTTSHALPAPVPPFSGQRAAVSSSDPSAQWSTPSHMRSALTQNSRCLHLNSLH 322
SS +++++S + + S +++ SSS S ++PS +S+ ++ S + S
Sbjct: 173 SSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSS-SKFSSSSFITSTT 231
Query: 321 PCSGMGSLTAVITNLK 274
P S S A+++N K
Sbjct: 232 PASSSSS-GAIVSNAK 246
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 4.9
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -3
Query: 501 SSEDPAATTTSHALPAPVPP----FSGQRAAVSSSDPSAQWSTPSHMRSALTQNSR 346
S PAAT S A P PP +R A +S S+ S+P+ + + +N+R
Sbjct: 204 SGSVPAATAASTASPVKKPPPPAPPKPRRLAARTSSNSSGVSSPTSVPPPVQRNTR 259
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 4.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 483 ATTTSHALPAPVPPFSGQRAAVSSSDPSAQWSTPSHMRSALTQNSR 346
A + + +PAPVP + A SS P+A S S+ + N+R
Sbjct: 1915 AISGNPGMPAPVPLTGKETAVPLSSMPNAPPSVASNAKLPPASNNR 1960
>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +2
Query: 221 NFVTLKYVTDNWGTDANGFKLVITAVKDPIPEHGCKEFRCKQRE 352
N +YV +W TD N + + +VKD + + E + ++
Sbjct: 138 NKTRTRYVLFSWRTDVNDIERKLKSVKDFLQDGNIVEIHVQNKK 181
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.6 bits (51), Expect = 8.5
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = -3
Query: 501 SSEDPAATTTSHALPAPVPPFSGQRAAVSSSDPSAQWSTPSHMRSALTQN--SRCLHLNS 328
S+ P+ ++ +H +P+P PP +A + S A S P Q + +N+
Sbjct: 1517 STLPPSQSSFAH-VPSPAPPAPQHPSAAALSSAPADNSMPHRSSPYAPQEPVQKPQAINN 1575
Query: 327 LHPCSGMGSLTAVITNLKP 271
+ P + +G+ + + P
Sbjct: 1576 IAPATNLGTSQSFSPRMGP 1594
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 24.6 bits (51), Expect = 8.5
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -3
Query: 498 SEDPAATTTSHALPA--PVPPFSGQR--AAVSSSDPSAQWSTPSHMRSALTQNS 349
S P AT++ + L P PP S + + SS PS++ +T +H S Q+S
Sbjct: 221 SFSPFATSSPNFLSTSTPAPPNSNNANPSTLFSSIPSSRHTTSNHFPSNSAQSS 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,437
Number of Sequences: 5004
Number of extensions: 31801
Number of successful extensions: 113
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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