Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_M03
(503 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 42 3e-04
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 40 9e-04
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 9e-04
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 40 0.001
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 40 0.001
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 40 0.001
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.008
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 37 0.011
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 36 0.014
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 36 0.014
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 36 0.014
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 36 0.019
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.033
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 35 0.033
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 35 0.033
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 35 0.044
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 35 0.044
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.058
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 34 0.077
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 33 0.10
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 33 0.13
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 33 0.18
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 32 0.23
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 32 0.31
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.41
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.41
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 0.47
SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 31 0.71
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.94
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012) 30 1.2
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 29 1.6
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 29 1.6
SB_17568| Best HMM Match : Ldl_recept_a (HMM E-Value=0.04) 29 1.6
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 29 2.2
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 2.9
SB_53603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_9755| Best HMM Match : Sushi (HMM E-Value=0) 28 3.8
SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_11910| Best HMM Match : Kelch_1 (HMM E-Value=0) 28 5.0
SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16) 27 6.6
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_11478| Best HMM Match : Toxin_11 (HMM E-Value=1.8) 27 6.6
SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32) 27 8.8
SB_29806| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_41915| Best HMM Match : F5_F8_type_C (HMM E-Value=9.1e-13) 27 8.8
SB_24598| Best HMM Match : Protamine_3 (HMM E-Value=1.4) 27 8.8
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 41.9 bits (94), Expect = 3e-04
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +2
Query: 293 AVKDP--IPEHGC--KEFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPEN 442
AV+ P +P H C EF C+ + CV L+CDG C DGSDE + CP N
Sbjct: 171 AVQPPFALPGHECLEDEFGCENGQ-CVKRGLLCDGDKACLDGSDEKHCS-CPSN 222
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 40.3 bits (90), Expect = 9e-04
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 311 PEHGCK--EFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPEN 442
P H C EF+C + C+ +L CDG C DGSDE T CP N
Sbjct: 87 PGHSCGSGEFQCDNGK-CIRKNLYCDGDFACVDGSDE-TRCECPSN 130
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 332 FRCKQREFCVSADLMCDGVDHCADGSDEDTAA 427
F C E C+ +CDG C D +DE A
Sbjct: 132 FLCPSGE-CIMGTQLCDGKKDCTDNTDEKNCA 162
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 40.3 bits (90), Expect = 9e-04
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 302 DPIPEHGCKEFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCP 436
+P+ +H C+ RC +E+ +CDG+D C D SDED P
Sbjct: 301 NPVTDHTCRNGRCVLKEW------LCDGMDDCGDSSDEDNCPTRP 339
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 320 GCK--EFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCP 436
GC EF C ++ C+ CDG D+C DGSDE +CP
Sbjct: 509 GCSSDEFTCTNQK-CIPLPQKCDGTDNCGDGSDE---KMCP 545
Score = 33.9 bits (74), Expect = 0.077
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 332 FRCKQREFCVSADLMCDGVDHCADGSDEDTAA 427
FRC C++ +CD HC G DE A
Sbjct: 577 FRCGSSTICIANSKVCDATPHCPHGEDERNCA 608
Score = 30.3 bits (65), Expect = 0.94
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 356 CVSADLMCDGVDHCADGSDE 415
C+ A +CDG C D SDE
Sbjct: 142 CIKASWLCDGASDCQDNSDE 161
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +2
Query: 311 PEHGC--KEFRCKQREFCVSADLMCDGVDHCADGSDE 415
P + C +F C + CV CDG + C D SDE
Sbjct: 339 PPYTCPPSDFTCANSQ-CVPNSFRCDGENDCGDRSDE 374
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDE 415
E C CV +CDG C DGSDE
Sbjct: 474 ERMCADGNGCVHRRWICDGERDCLDGSDE 502
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDE 415
EF C C+ CD C DGSDE
Sbjct: 426 EFTCAFSGRCIPGRFRCDHRSDCLDGSDE 454
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 305 PIPEHGCKEFRCKQREFCVSADLMCDGVDHCADGSDE 415
P EFRC C+++ CD C D SDE
Sbjct: 379 PTTTCSANEFRCDDGR-CITSTFRCDREFDCTDRSDE 414
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = +2
Query: 305 PIPEHGCKEFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPE 439
P P +F CK C+S CDG + C D SDED A C E
Sbjct: 821 PTPPCSAGKFTCKNGH-CISLRWKCDGENDCVDNSDEDEYAGCAE 864
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Frame = +2
Query: 302 DPIPEHGCKEFRCKQREF------CVSADLMCDGVDHCADGSDE 415
D E C E C EF CVS D +CDG D C D SDE
Sbjct: 2236 DNSDEARCPEVTCPAHEFTCPNGRCVSYDFLCDGEDDCGDFSDE 2279
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +2
Query: 290 TAVKDPIPEH-GC--KEFRCKQREFCVSADLMCDGVDHCADGSDEDTAALC 433
T ++ P H C E+ C+ CV +CDG + C DGSDE C
Sbjct: 2402 TTLQFPCVRHRNCTQSEYSCRSTSRCVPLAFVCDGENDCGDGSDESEEQNC 2452
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPENGGTGAGS 463
EFRC E CV A CDG + C D SDE T C + T G+
Sbjct: 2332 EFRCTSGE-CVPASWRCDGDNDCTDKSDEPTD--CQRSNATCTGA 2373
Score = 36.7 bits (81), Expect = 0.011
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Frame = +2
Query: 302 DPIPEHGCKEFRCKQREF------CVSADLMCDGVDHCADGSDE 415
D E GC +C + ++ C+SA +CD V+ C DGSDE
Sbjct: 3156 DGSDEKGCPPKQCAKHQYRCASGRCISASWVCDHVNDCGDGSDE 3199
Score = 36.3 bits (80), Expect = 0.014
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDEDT 421
EF+C C++ CDG+ CADGSDE T
Sbjct: 92 EFQCANGR-CINKKWRCDGMKDCADGSDEST 121
Score = 36.3 bits (80), Expect = 0.014
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 293 AVKDPIPEHGCK--EFRCKQREFCVSADLMCDGVDHCADGSDE 415
A K P GC EF+C+ C+ +CD D C D SDE
Sbjct: 1037 ATKATRPTFGCHSTEFQCETSSRCIPLRFVCDADDDCGDRSDE 1079
Score = 35.9 bits (79), Expect = 0.019
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 332 FRCKQREFCVSADLMCDGVDHCADGSDE 415
FRC + C D +CDG D C DGSDE
Sbjct: 915 FRCANGQ-CKPRDWVCDGFDDCGDGSDE 941
Score = 35.9 bits (79), Expect = 0.019
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 332 FRCKQREFCVSADLMCDGVDHCADGSDEDTAALCP 436
FRC + C+ +CDGV HC D SDE CP
Sbjct: 3292 FRCDNNK-CIPKWNVCDGVYHCTDKSDEAPYRSCP 3325
Score = 35.5 bits (78), Expect = 0.025
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 332 FRCKQREFCVSADLMCDGVDHCADGSDE 415
FRC CV +CDG+D C DGSDE
Sbjct: 3012 FRCDNFR-CVYRSRVCDGIDDCRDGSDE 3038
Score = 35.1 bits (77), Expect = 0.033
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDE 415
+ +C + C+ + +CDG D C DG DE
Sbjct: 2291 QVKCGSKNLCIPSSWLCDGSDDCGDGWDE 2319
Score = 35.1 bits (77), Expect = 0.033
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDEDTAA--LCPEN 442
+FRCK C++ + CD D C DGSDE CP +
Sbjct: 2461 QFRCKTGT-CITREWRCDHQDDCGDGSDEQQCVNYTCPNH 2499
Score = 35.1 bits (77), Expect = 0.033
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDE 415
+FRC C+S D +CDG + C D SDE
Sbjct: 3050 QFRCPSGR-CISRDWLCDGDNDCGDSSDE 3077
Score = 35.1 bits (77), Expect = 0.033
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 335 RCKQREFCVSADLMCDGVDHCADGSDEDTA 424
RC C+ ++ CDG C DGSDE++A
Sbjct: 3092 RCATGRRCIPSEWRCDGESDCEDGSDENSA 3121
Score = 34.7 bits (76), Expect = 0.044
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Frame = +2
Query: 302 DPIPEHGCKEFRCKQREF------CVSADLMCDGVDHCADGSDEDTAALCPENGGTG 454
D E C + C F C++ +CDG CADGSDE L G G
Sbjct: 2484 DGSDEQQCVNYTCPNHTFKCTSGHCIANSSVCDGDTDCADGSDEKDCDLGTSTCGAG 2540
Score = 33.9 bits (74), Expect = 0.077
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDEDT 421
EF C+ + CV +CDG + C DGSDE +
Sbjct: 2172 EFACESGQ-CVRKSFVCDGDNDCHDGSDESS 2201
Score = 33.9 bits (74), Expect = 0.077
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDEDT 421
+F C C+S L+CDG + C D SDE T
Sbjct: 2374 QFACDNGR-CISTRLLCDGDNDCGDNSDETT 2403
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 323 CK--EFRCKQREFCVSADLMCDGVDHCADGSDE 415
CK EF C C+ +CDG + C D SDE
Sbjct: 1087 CKPFEFACANGRHCIQRKWICDGENDCGDRSDE 1119
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCP 436
+F C C+S CDG D C DGSDE + CP
Sbjct: 2930 DFMCDNYR-CISRLWRCDGEDDCGDGSDEPDS--CP 2962
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 332 FRCKQREFCVSADLMCDGVDHCADGSDE 415
FRC C+ CDG C DGSDE
Sbjct: 3133 FRCYSDRRCIPNQWKCDGESDCNDGSDE 3160
Score = 32.3 bits (70), Expect = 0.23
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 302 DPIPEHGCKE--FRCKQREFCVSADLMCDGVDHCADGSDE 415
D P CK ++C C+S +CDG+ C G DE
Sbjct: 2959 DSCPVRVCKPGTYQCADNRKCISVLEVCDGIPSCPAGDDE 2998
Score = 31.1 bits (67), Expect = 0.54
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 320 GCKEFRCKQREFCVSADLMCDGVDHCADGSDE 415
G +RC C++ +CDG C D SDE
Sbjct: 1128 GNDRWRCSNTSRCIAKSQVCDGRVDCPDASDE 1159
Score = 30.7 bits (66), Expect = 0.71
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDE----DTAALCPENGG 448
+F+C R CV +CD D C D SDE T C N G
Sbjct: 3334 QFKCLNRR-CVPVRAVCDSNDDCGDISDELQCPSTNRTCAVNNG 3376
Score = 30.3 bits (65), Expect = 0.94
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 332 FRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPE 439
F C C++A +CD + C D SDE A CPE
Sbjct: 2214 FSCNNGR-CINAKWVCDRENDCGDNSDE---ARCPE 2245
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDEDTAAL 430
E+ C C+ +CDG + C D DE + L
Sbjct: 131 EWHCIGTSRCIPLSRVCDGTNDCGDNYDEGSHCL 164
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDEDTAA--LCPE 439
+F C C++ CDG+ CAD SDE + CP+
Sbjct: 3211 QFSCDDG-LCIARAWKCDGMMDCADASDEKGSGHRWCPQ 3248
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 356 CVSADLMCDGVDHCADGSDE 415
CV +CD +D C D SDE
Sbjct: 3258 CVDRRWLCDDMDDCGDYSDE 3277
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPEN 442
+F+C+ + C+ + +CDGV C D SDED CP +
Sbjct: 10 QFQCRASKICIKSSFVCDGVPDCNDHSDEDD---CPNS 44
Score = 31.9 bits (69), Expect = 0.31
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 299 KDPIPEHGC--KEFRCKQREFCVSADLMCDGVDHCADGSDE 415
+D P C ++ C + C++ L CDG C+D SDE
Sbjct: 38 EDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYSDE 78
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPEN 442
+F+C+ + C+ + +CDGV C D SDED CP +
Sbjct: 1307 QFQCRASKICIKSSFVCDGVPDCNDHSDEDD---CPNS 1341
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDEDTAALC 433
E RCK CV +CD D C DG+DED LC
Sbjct: 124 EVRCKNSGHCVQQQQVCDFTDDCGDGTDED-PTLC 157
Score = 33.9 bits (74), Expect = 0.077
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDEDTAA 427
EF C + + C++ CDG C DG DE A
Sbjct: 342 EFYCSKDDRCINIFWKCDGESDCTDGEDEQGCA 374
Score = 31.9 bits (69), Expect = 0.31
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 299 KDPIPEHGC--KEFRCKQREFCVSADLMCDGVDHCADGSDE 415
+D P C ++ C + C++ L CDG C+D SDE
Sbjct: 1335 EDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYSDE 1375
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 296 VKDPIPEHGCKE--FRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPENGGTGAGS 463
+++ I + GC E F C++ C++ +CD V C DGSDE + + G GS
Sbjct: 892 LQESIVKGGCAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPISRRDEEFGCGS 949
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +2
Query: 314 EHGC--KEFRCKQREFCVSADLMCDGVDHCADGSDE 415
E GC +F C C+ +CD + C D DE
Sbjct: 944 EFGCGSDKFTCDNGAKCLPLTWLCDSITDCMDSKDE 979
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 332 FRCKQREFCVSADLMCDGVDHCADGSDE 415
+RC + C+ +CD V C D DE
Sbjct: 841 YRCDNGKKCIPLKWICDSVADCDDKRDE 868
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 323 CKE--FRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPEN 442
CKE FRC + C+ D CD +C DGSDE A C N
Sbjct: 1346 CKENQFRCDNGQ-CIDGDPRCDKYKNCTDGSDELGCATCEPN 1386
Score = 35.5 bits (78), Expect = 0.025
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2
Query: 332 FRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPENG 445
FRC + C+SA CD +D C D SDE P NG
Sbjct: 1388 FRCNTGK-CISARWQCDQLDDCGDNSDEIGCDTPPGNG 1424
Score = 30.7 bits (66), Expect = 0.71
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 347 REFCVSADLMCDGVDHCADGSDEDTAALCPEN 442
+ C+ CDG+ C D SDE+ C EN
Sbjct: 1318 KAICIPKMWRCDGMLDCTDKSDEEDCPPCKEN 1349
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +2
Query: 320 GCKEFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCP 436
G EF+C E C+ CDG C DG DE CP
Sbjct: 697 GLHEFQCSSGE-CIEVATFCDGKKDCGDGFDETHCGSCP 734
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +2
Query: 311 PEHGCKE--FRCKQREFCVSADLMCDGV-DHCADGSDE 415
P + C + F C E CV+ C+G+ D C DGSDE
Sbjct: 655 PGYKCLDHLFTCNNGE-CVTKTSRCNGMRDSCVDGSDE 691
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Frame = +2
Query: 281 LVITAVKDPIPEHGCKEFRC--KQREF------CVSADLMCDGVDHCADGSDE 415
++ T + +P H FRC K +F CVS DL+CDG + C D SDE
Sbjct: 1098 IISTETCEQLPVHSVPGFRCPDKSTQFQCVNGQCVSRDLICDGDNACLDFSDE 1150
Score = 32.3 bits (70), Expect = 0.23
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDE 415
+F C+ E C+ +CDG D C D SDE
Sbjct: 1159 KFACESGE-CIDVVGLCDGTDDCKDASDE 1186
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 314 EHGCK--EFRCKQREFCVSADLMCDGVDHCADGSDE 415
+H C E++C CV L CDG C DG+DE
Sbjct: 1190 DHKCSKDEYQCVSGA-CVKWPLTCDGKKDCEDGTDE 1224
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 37.1 bits (82), Expect = 0.008
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDE 415
EF C + C++A CDG D C D SDE
Sbjct: 590 EFTCVNTQKCIAATWKCDGEDDCGDNSDE 618
Score = 31.5 bits (68), Expect = 0.41
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 317 HGCK--EFRCKQREFCVSADLMCDGVDHCADGSDE 415
H C+ EF C + C+ + CDG CAD SDE
Sbjct: 704 HTCRPNEFTCADKR-CILSRWRCDGDRDCADNSDE 737
Score = 31.5 bits (68), Expect = 0.41
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +2
Query: 311 PEHGCK--EFRCKQREFCVSADLMCDGVDHCADGSDE-DTAAL--CPENGG 448
P CK EF+C + C+ +CDG C + +DE D + C +N G
Sbjct: 785 PPSICKDGEFQCGSSKQCIPESKVCDGSVDCTNSADEPDNCFINECKDNNG 835
Score = 30.7 bits (66), Expect = 0.71
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDEDTAA---LCPEN 442
+FRC C+ +CD D C DGSDE + C EN
Sbjct: 631 QFRCTNGR-CIPRRWVCDKDDDCHDGSDERNSCATMTCSEN 670
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 323 CK--EFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCP 436
CK E++C E C+ +CDG C + SDE+ P
Sbjct: 747 CKSSEYQCSTGE-CIHKSWVCDGEFDCLNKSDENNCPTKP 785
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Frame = +2
Query: 317 HGCKEFRCKQREF------CVSADLMCDGVDHCADGSDE 415
+ C C + E CV +CD D C DG+DE
Sbjct: 660 NSCATMTCSENEITCGNGICVVKRWVCDQDDDCGDGTDE 698
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 36.7 bits (81), Expect = 0.011
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 326 KEFRCKQREFCVSADLMCDGVDHCADGSDEDTAAL 430
+ ++C+ E C+S DL+CD C DGSDE+ +
Sbjct: 707 ESYKCRSGE-CISLDLLCDFNKDCLDGSDEENCGV 740
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 356 CVSADLMCDGVDHCADGSDEDTAA 427
C+S +CD VD C DG DE A
Sbjct: 497 CISHGQLCDFVDDCGDGWDETGCA 520
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 36.3 bits (80), Expect = 0.014
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 302 DPIPEHGCK--EFRCKQREFCVSADLMCDGVDHCADGSDE 415
DP+ C EF+C+ C+ +CDG C DG DE
Sbjct: 204 DPVTPPPCMPGEFKCQSTGRCIPESKVCDGTRDCQDGEDE 243
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 36.3 bits (80), Expect = 0.014
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 320 GCKEFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPENGG-TGAG 460
G +FRC+ C++ + +CD + C DGSDE A NGG GAG
Sbjct: 135 GSTQFRCRNGN-CINRNYVCDKDNDCGDGSDE--VACSRLNGGWCGAG 179
Score = 35.1 bits (77), Expect = 0.033
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 323 CKEFRCKQREFCVSADLMCDGVDHCADGSDEDTAALC 433
C +F+C CV + CDG + C DG+DE C
Sbjct: 99 CSQFKCNNGH-CVHRNWKCDGSNDCRDGTDEVGCGKC 134
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 320 GCKEFRCKQREFCVSADLMCDGVDHCADGSDE 415
G ++RC + C+ + +CD ++ C D SDE
Sbjct: 177 GAGQYRC-DNDRCIPLNWVCDRLNDCHDNSDE 207
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 36.3 bits (80), Expect = 0.014
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 293 AVKDPIPEHGCK--EFRCKQREFCVSADLMCDGVDHCADGSDE 415
A K P GC EF+C+ C+ +CD D C D SDE
Sbjct: 64 ATKATRPTFGCHSTEFQCETSSRCIPLRFVCDADDDCGDRSDE 106
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 323 CK--EFRCKQREFCVSADLMCDGVDHCADGSDE 415
CK EF C C+ +CDG + C D SDE
Sbjct: 114 CKPFEFACANGRHCIQRKWICDGENDCGDRSDE 146
Score = 31.1 bits (67), Expect = 0.54
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 320 GCKEFRCKQREFCVSADLMCDGVDHCADGSDE 415
G +RC C++ +CDG C D SDE
Sbjct: 155 GNDRWRCSNTSRCIAKSQVCDGRVDCPDASDE 186
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 35.9 bits (79), Expect = 0.019
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 12/140 (8%)
Frame = +2
Query: 35 DCTVTFQTHS--ILQRFMLHFDLLQLD---CND-HLYVYDGAHATTPAKVDLSCRNTKQQ 196
+CT Q + I+ FD+ L+ C + ++ YDG + KV N+K+
Sbjct: 316 ECTWKIQAENGEIVSVIFNEFDVGTLEDSNCEENYVEFYDGIDENS--KVITRYCNSKKV 373
Query: 197 VGALFTRSNFVTLKYVTDNWGTDANGFKLVITAVKDPIPEHGCKE------FRCKQREFC 358
+ + + F+ +K +W +GF T V C E F+C +
Sbjct: 374 IRDVRSTGKFMFVKL---HWEATNDGFLATYTTVDPSNHLDKCSESANELLFKCDNDNY- 429
Query: 359 VSADLMCDGVDHCADGSDED 418
+ CDG D C D SDED
Sbjct: 430 IQCQWKCDGTDDCGDHSDED 449
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 35.1 bits (77), Expect = 0.033
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +2
Query: 299 KDPIPEHGC-----KEFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPENGGTGAGS 463
+D E GC +FRC+ CVS +CD + C DGSDE C GG G+
Sbjct: 107 RDGSDETGCGSCSSSQFRCRNGR-CVSRSWVCDKDNDCGDGSDE---VQCNRAGGGWCGA 162
Score = 30.3 bits (65), Expect = 0.94
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 320 GCKEFRCKQREFCVSADLMCDGVDHCADGSDE 415
G +RC + C+ + +CD + C DGSDE
Sbjct: 161 GAGRYRC-DNDRCIPRNWVCDRDNDCGDGSDE 191
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 377 CDGVDHCADGSDEDTAALC 433
CDG + C DGSDE C
Sbjct: 100 CDGENDCRDGSDETGCGSC 118
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 35.1 bits (77), Expect = 0.033
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 311 PEHGCK--EFRCKQREFCVSADLMCDGVDHCADGSDE 415
P C+ EF C CV L+CDGVD C D SDE
Sbjct: 99 PISSCRSWEFSCLNGR-CVFYRLVCDGVDDCGDSSDE 134
Score = 31.9 bits (69), Expect = 0.31
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = +2
Query: 293 AVKDPIPEHGCK--EFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCP 436
A P C EF+C R CV CDG + C D SDE + P
Sbjct: 139 ATATPFVPRSCHYWEFQCANRR-CVYNSQRCDGQNDCGDWSDETGCSTPP 187
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +2
Query: 311 PEHG-C--KEFRCKQREFCVSADLMCDGVDHCADGSDE 415
P HG C FRC C+ CDG + C D SDE
Sbjct: 5 PAHGSCPSNRFRCNNGR-CIPMSWRCDGDNDCGDMSDE 41
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDE 415
+F C C+S +CD + C DGSDE
Sbjct: 54 QFSCSNGR-CISRSWVCDRDNDCGDGSDE 81
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 35.1 bits (77), Expect = 0.033
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 320 GCKE--FRCKQREFCVSADLMCDGVDHCADGSDE 415
GC E F C++ C++ +CD V C DGSDE
Sbjct: 87 GCAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDE 120
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 332 FRCKQREFCVSADLMCDGVDHCADGSDE 415
+RC + C+ +CD V C D DE
Sbjct: 28 YRCDNGKKCIPLKWICDSVADCDDKRDE 55
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 34.7 bits (76), Expect = 0.044
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 311 PEHGCKEFRCKQREFCVSADLMCDGVDHCADGSDE 415
P+ + RC CV +CDG+ CADGSDE
Sbjct: 92 PKCRISQRRCDNGSGCVDRMKICDGMRDCADGSDE 126
Score = 31.9 bits (69), Expect = 0.31
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +2
Query: 317 HGCK--EFRCKQREFCVSADLMCDGVDHCADGSDE 415
H C EFRC C++ CD D C D SDE
Sbjct: 2 HTCSATEFRCNNGR-CITRAFRCDDEDDCLDNSDE 35
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDE 415
+F+C C+ +CDG C+ G DE
Sbjct: 47 QFQCGTSRKCIRKSKICDGKSDCSGGEDE 75
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 34.7 bits (76), Expect = 0.044
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPENGG-TGAG 460
+FRC+ C++ + +CD + C DGSDE A NGG GAG
Sbjct: 4 QFRCRNGN-CINRNYVCDKDNDCGDGSDE--VACSRLNGGWCGAG 45
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 320 GCKEFRCKQREFCVSADLMCDGVDHCADGSDE 415
G ++RC + C+ + +CD ++ C D SDE
Sbjct: 43 GAGQYRC-DNDRCIPLNWVCDRLNDCHDNSDE 73
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 34.3 bits (75), Expect = 0.058
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 320 GCKEFRCKQREFCVSADLMCDGVDHCADGSDED-TAALCPE-NGG 448
G +EF C C+ ++CDG+ CAD SDE C E NGG
Sbjct: 66 GIEEFDCGNST-CIPLTVLCDGLYDCADRSDESKKCEECAERNGG 109
Score = 33.9 bits (74), Expect = 0.077
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDE 415
EF C+ + CV +CDG + C DGSDE
Sbjct: 25 EFECENK-LCVPRTWLCDGDNDCHDGSDE 52
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 33.9 bits (74), Expect = 0.077
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 311 PEHGCK--EFRCKQREFCVSADLMCDGVDHCADGSDEDT 421
P GC E RC + C++A +CD C+DGSDE T
Sbjct: 2546 PPPGCNSGEHRCSNGQ-CINAIQVCDFKKDCSDGSDEAT 2583
Score = 33.9 bits (74), Expect = 0.077
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDE 415
+FRC R C S+D +CD D C D SDE
Sbjct: 3624 QFRCT-RGSCTSSDNVCDFSDDCGDSSDE 3651
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 305 PIPEHGCKEFRCKQREFCVSADLMCDGVDHCADGSDED 418
P+ ++G +FRC R C+ +CD D C D SDE+
Sbjct: 2091 PMCQYG--QFRCA-RGSCIDTGRVCDFTDDCGDNSDEN 2125
Score = 31.9 bits (69), Expect = 0.31
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 356 CVSADLMCDGVDHCADGSDEDTAALCP 436
C+ +CD D C D SDE AL P
Sbjct: 3216 CIQKSKLCDFTDDCGDNSDEGRCALYP 3242
Score = 31.1 bits (67), Expect = 0.54
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 332 FRCKQREFCVSADLMCDGVDHCADGSDEDTAALC 433
FRC C+ L CD + C+DG DE + C
Sbjct: 2251 FRCTDGS-CIMQSLRCDYQNDCSDGLDEASCGTC 2283
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 305 PIPEHGCK--EFRCKQREFCVSADLMCDGVDHCADGSDE 415
P P C +FRC C+S+ CD C DGS+E
Sbjct: 2777 PDPPSSCSSNQFRCDSGH-CISSSSKCDFETDCCDGSEE 2814
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = +2
Query: 305 PIPEHGCKEFRCKQR--EFCVSADLMCDGVDHCADGSDEDTAALCPENGGTGAGSAW 469
P+ EF C C+ + +CD +C DGSDE + +G+ W
Sbjct: 3843 PVSTCSSAEFNCVAEGPNACILSTQVCDFSKNCKDGSDEKNCVQPSCDFSSGSFCGW 3899
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 326 KEFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPEN 442
++F C C+ +CD C DGSDE + CP N
Sbjct: 3428 QQFGCVTDGKCIPLTSVCDFNVDCLDGSDERS---CPSN 3463
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 33.5 bits (73), Expect = 0.10
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 311 PEHGCK--EFRCKQREFCVSADLMCDGVDHCADGSDEDTAA 427
P H C +F+C CV +L CDG C D SDE A
Sbjct: 34 PSHSCHGDQFQCLNG-MCVGQELRCDGDYACVDHSDERNCA 73
Score = 31.5 bits (68), Expect = 0.41
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 356 CVSADLMCDGVDHCADGSDE 415
CV+ L C+GV C DGSDE
Sbjct: 123 CVTWSLTCNGVSDCQDGSDE 142
Score = 31.1 bits (67), Expect = 0.54
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDE 415
EF+C + CV C+G C DGSDE
Sbjct: 78 EFKCPDGK-CVHPSKFCNGESDCTDGSDE 105
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDE 415
+F C E C+ L CDG + CAD SDE
Sbjct: 27 QFECTSSE-CIPDVLKCDGSEDCADSSDE 54
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 32.7 bits (71), Expect = 0.18
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Frame = +2
Query: 302 DPIPEHGCKEFRCKQREF-----CVSADLMCDGVDHCADGS-DEDTAALCPENGGTGAGS 463
D E GC C +EF CV CDG C G DE+ A GG G +
Sbjct: 118 DSSDEEGCVNRTCSSKEFNCNNQCVPLSWKCDGEKDCRPGGFDEEGCAHIAFQGG-GFVT 176
Query: 464 AW 469
AW
Sbjct: 177 AW 178
Score = 31.9 bits (69), Expect = 0.31
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Frame = +2
Query: 281 LVITA-VKDPIPEH-----GCKEFRCKQREFCVSADLMCDGVDHCADGSDED 418
L +TA P PE G + F+C C+ CDG C D SDE+
Sbjct: 72 LAVTAECMSPAPEKLAKNCGSRHFKCVSDGKCIPKSWRCDGEMDCPDSSDEE 123
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 311 PEHGCK--EFRCKQREFCVSADLMCDGVDHCADGSDEDTAA 427
P H C +F+C CV ++ CDG C D SDE A
Sbjct: 34 PSHSCHGDQFQCLNG-MCVGQEVRCDGDYACVDHSDERNCA 73
Score = 31.5 bits (68), Expect = 0.41
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 356 CVSADLMCDGVDHCADGSDE 415
CV+ L C+GV C DGSDE
Sbjct: 123 CVTWSLTCNGVSDCQDGSDE 142
Score = 31.1 bits (67), Expect = 0.54
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDE 415
EF+C + CV C+G C DGSDE
Sbjct: 78 EFKCPDGK-CVHPSKFCNGESDCTDGSDE 105
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 31.9 bits (69), Expect = 0.31
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 323 CK--EFRCKQREFCVSADLMCDGVDHCADGSDE 415
CK +FRC C+S L+CD D C D SDE
Sbjct: 5 CKAGDFRCANGR-CISGALVCDLDDDCGDESDE 36
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 31.9 bits (69), Expect = 0.31
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Frame = +2
Query: 119 HLYVYDG-AHATTPAKVDLSCRNTKQQVGALFTRSNFVTLKYVTDNWGTDANGFKL-VIT 292
++ VYDG HA+ + + TK + +RSN + ++ ++ + G + F +
Sbjct: 333 YVQVYDGPGHASVIGQFCGAVMPTK-----VVSRSNKLVVRALSGD-GANTGWFSARYLV 386
Query: 293 AVKDPIPEHGCKEFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPENGGTGAGSAWL 472
+ + P G K+F C+ R+ C+ C+ C DGSDE + PE S W
Sbjct: 387 SSEGPC---GPKKFTCQNRQ-CIDDFKQCNNRQDCRDGSDEISCP--PEQEMLSWYSFWP 440
Query: 473 VVV 481
V V
Sbjct: 441 VTV 443
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 31.9 bits (69), Expect = 0.31
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDED 418
EF+C C+S CDG +C D SDED
Sbjct: 213 EFQCTSGH-CISGSSRCDGDYNCMDRSDED 241
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +2
Query: 302 DPIPEHGCK----EFRCKQREFCVSADLMCDGVDHCADGSDE 415
D E GCK E C CV + +CDGV C G DE
Sbjct: 236 DRSDEDGCKCFTNELTCSSGR-CVQSINLCDGVRDCEYGLDE 276
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 31.5 bits (68), Expect = 0.41
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 239 YVTDNWGTDANGFKLVIT--AVKDPIPEHGCKEFRCKQREFCVSADLMCDGVDHCADGSD 412
Y T G +GF T A+ P+ +EF C + CV +CDG C+D SD
Sbjct: 189 YCTCQRGYTGDGFTCTATPRAILSPM-SCSEEEFPCASGD-CVPLTSVCDGSADCSDSSD 246
Query: 413 E 415
E
Sbjct: 247 E 247
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 31.5 bits (68), Expect = 0.41
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 317 HGCK--EFRCKQREFCVSADLMCDGVDHCADGSDE 415
H C+ EF C + C+ + CDG CAD SDE
Sbjct: 549 HTCRPNEFTCADKR-CILSRWRCDGDRDCADNSDE 582
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 323 CK--EFRCKQREFCVSADLMCDGVDHCADGSDEDT 421
CK E++C E C+ +CDG C + SDE T
Sbjct: 592 CKSSEYQCSTGE-CIHKSWVCDGEFDCLNKSDETT 625
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 25.8 bits (54), Expect(2) = 0.47
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 338 CKQREFCVSADLMCD 382
CK + CV +DL+CD
Sbjct: 620 CKDKNECVGSDLLCD 634
Score = 23.8 bits (49), Expect(2) = 0.47
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 377 CDGVDHCADGS-DEDTAALCPENGGT 451
C +D C+DGS D A+C GT
Sbjct: 661 CADIDECSDGSHDCHVNAICTNVPGT 686
>SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 31.1 bits (67), Expect = 0.54
Identities = 21/84 (25%), Positives = 33/84 (39%)
Frame = -3
Query: 489 PAATTTSHALPAPVPPFSGQRAAVSSSDPSAQWSTPSHMRSALTQNSRCLHLNSLHPCSG 310
P TT S P PF + +D S +TPS + T S + + H S
Sbjct: 202 PIKTTPSEVSPIETTPFDVLPIKTTHTDVSPIETTPSEVSPIETTPSEVSPIKTTH--SE 259
Query: 309 MGSLTAVITNLKPFASVPQLSVTY 238
+ + T++ P + P +TY
Sbjct: 260 VSPIKTTRTDVSPIETTPTGGITY 283
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 30.7 bits (66), Expect = 0.71
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 326 KEFRCKQREFCVSADLMCDGVDHCADGSDE 415
K+ RC C CDG D C DGSDE
Sbjct: 227 KQLRCDNGR-CEDKRWWCDGQDDCNDGSDE 255
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 30.7 bits (66), Expect = 0.71
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 332 FRCKQREFCVSADLMCDGVDHCADGSDE 415
F+C+ C+ +CDG D C D SDE
Sbjct: 364 FKCRSG-VCIPPQWICDGKDDCGDRSDE 390
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +2
Query: 317 HGCKEFRCKQREF---CVSADLMCDGVDHCADGSDED 418
H +F C + C+ CDG CAD SDE+
Sbjct: 269 HPTWQFTCNNNHWWKQCIDISYKCDGKPECADHSDEN 305
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 30.7 bits (66), Expect = 0.71
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Frame = -3
Query: 480 TTTSHALPAPVPPFSGQRAAVSSSDPSAQWSTPSHMRSALTQNSRCLHLN-SLHPCSGMG 304
T S +P +PPF+G P Q T + T + L + S S
Sbjct: 1724 TYASPKVPTQLPPFTGSIVTEGKPSPRPQLKTTTTSPHLTTDSPTVLDPDTSASTESSKA 1783
Query: 303 SLTAVITNLKPFASVPQLSVTYLSVTKLLRVNRAP 199
LT ++++ P + + + T L T +L+ AP
Sbjct: 1784 PLTKLVSSPGPETTAVRETSTVLETTAVLKTPSAP 1818
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 30.7 bits (66), Expect = 0.71
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 302 DPIPEHGCK----EFRCKQREFCVSADLMCDGVDHCADGSDE--DTAALCPEN 442
D E GCK E C CV + +CDGV C G DE +++CP N
Sbjct: 221 DRSDEDGCKCFTNELTCSSGR-CVPSINLCDGVKDCEHGLDELRCGSSVCPLN 272
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDED 418
EF+C C+S CD +C D SDED
Sbjct: 198 EFQCASGH-CISGSSRCDSDYNCMDRSDED 226
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 30.3 bits (65), Expect = 0.94
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDED 418
EF+C C+S CD +C D SDED
Sbjct: 279 EFQCTSGH-CISGSSRCDSDYNCMDSSDED 307
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +2
Query: 302 DPIPEHGCK----EFRCKQREFCVSADLMCDGVDHCADGSDE 415
D E GCK E C CV + +CDGV C G DE
Sbjct: 302 DSSDEDGCKCFTNELTCSSGR-CVPSINLCDGVKDCEQGLDE 342
>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Frame = +2
Query: 272 GFKLVITAVKDPIPEHGCKEFRCKQREFCV----------SADLMCDGVDHCADGSDEDT 421
G++ ++ P+ GC +C + C S + +C+G HCA+ + D
Sbjct: 223 GYEQALSGQCVPVCTQGCVNGKCTSPDVCTCSFGWTGPNCSVECLCNGHGHCANATKRDV 282
Query: 422 AALCPENGGTGAGSAWLVVVAAGSS 496
C N TG+ + + G +
Sbjct: 283 CTDC-RNHTTGSSCQYCEPLYVGDA 306
>SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)
Length = 1551
Score = 29.9 bits (64), Expect = 1.2
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 14/72 (19%)
Frame = +2
Query: 185 TKQQVGALFTRSNFVTLKYVTDNWGTD--ANGF-------KLVI----TAVKDP-IPEHG 322
T Q+ GA +RS+ +T Y + +W D A F ++V+ T V+DP + EHG
Sbjct: 94 TVQENGADKSRSSQLTYSYHSSSWTVDFRAESFVGDKGAKEMVVYESKTKVQDPPVGEHG 153
Query: 323 CKEFRCKQREFC 358
C ++EFC
Sbjct: 154 CPAVVEAEKEFC 165
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 311 PEHGCKEFRCKQREFCVSADLMCDGVDHCADGSDEDTAAL 430
P G EF C CV L C+G C D SDE +
Sbjct: 724 PGCGNGEFYCGVPGECVPQTLRCNGQMDCRDASDEQDCGI 763
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDED 418
EF+C C+S CD +C D SDED
Sbjct: 235 EFQCASGH-CISGSSRCDSDYNCMDRSDED 263
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 329 EFRCKQREFCVSADLMCDGVDHCADGSDED 418
EF+C C+S CD +C D SDED
Sbjct: 1108 EFQCASGH-CISGSSRCDSDYNCMDRSDED 1136
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Frame = +2
Query: 302 DPIPEHGCK----EFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPE 439
D E GCK E C CV + +CDGV C G DE P+
Sbjct: 1131 DRSDEDGCKCFTNELTCSSGR-CVPSINLCDGVKDCEHGLDELRCVRLPD 1179
>SB_17568| Best HMM Match : Ldl_recept_a (HMM E-Value=0.04)
Length = 189
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 326 KEFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPENG 445
K+F C + + D C DGSDE A CP NG
Sbjct: 44 KDFTCLDGSLTIPFSSVNDDYCDCNDGSDEPGTAACP-NG 82
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 332 FRCKQREFCVSADLMCDGVDHCADGSDE 415
F+C C+SA +CD + C D SDE
Sbjct: 12 FKCDNGR-CISATWVCDTENDCGDNSDE 38
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Frame = +2
Query: 311 PEHGCKEFRCKQREFCVSADLM-----CDGVDHCADGSDEDTAALCPENGGTGAGS 463
PE +C ++C + +L CD +C GSD T CPE GS
Sbjct: 2678 PERSHNMTKCTPGKYCDTVELPLPVADCDAGFYCPLGSDSRTKVRCPEGHYCPKGS 2733
>SB_53603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 456
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +2
Query: 269 NGFKLVITAVKDPIPEHGCKEFRC---KQREFCVSADLMCDGVDHCADGSDEDTA 424
+ F L +T + +P + C K EFCV+ L+C + A G D +A
Sbjct: 395 DSFSLSVTQNSNRVPFNAENPVSCWEEKDYEFCVAPVLVCTEIKQTAGGGDNISA 449
>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1351
Score = 28.3 bits (60), Expect = 3.8
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 170 LSCRNTKQQVGALFTRSNFV--TLKYVTDNWGTDANGFKLVITAVKDPIPEHGCKEFRCK 343
+S N+ Q V L + FV + +V D+ +D N + ++ + PI F C+
Sbjct: 991 ISVSNSVQFVNYLVLSTIFVGNAVLFVDDSVISDHNSSESIVYLISAPIRSR----FSCR 1046
Query: 344 QREFCVSADLMCDGV 388
R C +A+ + DG+
Sbjct: 1047 LRSSCQAAERLYDGL 1061
>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 80 MLHFDLLQLDCN-DHLYVYDGAHATTPAKVDLS 175
+L D +C+ DHLYVYDG P LS
Sbjct: 216 VLELDEFATECSWDHLYVYDGRSIRAPLLGTLS 248
>SB_11910| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 456
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2
Query: 113 NDHLYVYDGAHATTPAKVDLSCRNTKQQVGALFTRSNFVTLKYV 244
ND +YV G A + D +N VGA+ TR NF L+Y+
Sbjct: 384 NDLIYVVGGRVANSIEYYDKD-QNEWTVVGAVNTRCNFGVLRYI 426
>SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16)
Length = 187
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 356 CVSADLMCDGVDHCADGSDE 415
CV D +C+ D C D SDE
Sbjct: 157 CVDRDQLCNFKDDCGDNSDE 176
>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -1
Query: 491 IPLLPP-PATHYQHQYRH 441
I +LPP P+THY H ++H
Sbjct: 683 INILPPSPSTHYHHHHQH 700
>SB_11478| Best HMM Match : Toxin_11 (HMM E-Value=1.8)
Length = 392
Score = 27.5 bits (58), Expect = 6.6
Identities = 18/38 (47%), Positives = 18/38 (47%)
Frame = +2
Query: 320 GCKEFRCKQREFCVSADLMCDGVDHCADGSDEDTAALC 433
GC E KQ EF VSADL C A S D LC
Sbjct: 114 GCLE---KQAEFSVSADLTCPN----ATNSSSDCPGLC 144
>SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32)
Length = 326
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 302 DPIPEHGCKEFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPENGGTGAGS 463
DP+ G + C++ E C + CD D CA GS + G+G+GS
Sbjct: 237 DPVQGKGIQY--CRE-ERCGKTSVGCDDDDSCASGSG---SGFVSSGSGSGSGS 284
>SB_29806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 456
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 453 PVPPFSGQRAAVSSSDPSAQWSTPSHM 373
P P F+ +A S PS +W++PSH+
Sbjct: 150 PAPEFTADHSADS---PSLEWNSPSHL 173
>SB_41915| Best HMM Match : F5_F8_type_C (HMM E-Value=9.1e-13)
Length = 317
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 317 HGCKEFRCKQREFCVSADLMCDGVDHCADGSDEDTAALCPENGGT 451
H K KQ CV + CDG +C + ++C NGGT
Sbjct: 59 HAYKSITGKQLTTCV---ITCDGDPNCYSLNYRFPTSICELNGGT 100
>SB_24598| Best HMM Match : Protamine_3 (HMM E-Value=1.4)
Length = 407
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -3
Query: 501 SSEDPAATTTSHALPAPVPPFSGQRAAVSSSDPSAQWSTPSHMRSALTQNSR 346
S + ATT+S P+P P + + A + ++PS + S + T+ +R
Sbjct: 212 SVAEKKATTSSSKRPSPSAPETNKTAKRTRNEPSEREGADSERKEKSTKETR 263
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,054,540
Number of Sequences: 59808
Number of extensions: 290691
Number of successful extensions: 1176
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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