Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M02
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0574 + 4252087-4253973                                           28   6.1  
03_05_1084 - 30252933-30253019,30253107-30253226,30253498-302535...    28   6.1  
02_04_0518 + 23601355-23602498,23603481-23603779                       28   6.1  

>07_01_0574 + 4252087-4253973
          Length = 628

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 52  LVFDDRFSNPRVVATQAGIISKCPTNSCLWFLHVCF 159
           +++DD ++   V+ T+ GII +C +++C +     F
Sbjct: 243 MMYDDLYTKALVLRTRTGIILRCISHACSFVAFALF 278


>03_05_1084 -
           30252933-30253019,30253107-30253226,30253498-30253527,
           30253608-30253652,30253807-30253851,30253927-30254154,
           30254599-30254673,30255426-30255547,30256429-30256543,
           30257493-30257750
          Length = 374

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 585 QTDNLAPNEPLCLKLHMTIDTVCLTHYSLIYGTF 686
           Q DN   N+ + L+L ++  TVCL+ YSL+ G F
Sbjct: 296 QLDNHR-NQLIQLELFLSSGTVCLSLYSLVAGIF 328


>02_04_0518 + 23601355-23602498,23603481-23603779
          Length = 480

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 167 GKEKHTCRNHRQELVGHLLMMPAWV-ATTLGFENLSS 60
           G E H  R HR     HL+ MPA   A + GFEN +S
Sbjct: 258 GCELHCRRAHRVNKEKHLMTMPADAGAQSNGFENAAS 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,840,805
Number of Sequences: 37544
Number of extensions: 232584
Number of successful extensions: 460
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)