Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M02
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    29   4.7  

>SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +1

Query: 19   WFSSDAAGTHLLVFDDRFSNPRVVATQAGIISKCPTNSCLWFLHVCFSLPKAHAYYIVES 198
            WF  D   +H L +D R S  R+V  +     +C   S  +   + F LP  H  Y+  +
Sbjct: 835  WFPYDGTRSHSLAYDRRASLHRIVRDREMEAFECIEKSLSFHHRLLFHLP--HLTYLFRA 892

Query: 199  RW-VRTYV 219
            R+ +R ++
Sbjct: 893  RYRIRPFI 900


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 458 FF*HIKFNKKPPEVSLIGVSVKWTLLS 538
           F+ +++FN   P+VS +G+  KW  L+
Sbjct: 449 FYPYVQFNLNDPQVSPVGIENKWFYLA 475


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,484,064
Number of Sequences: 59808
Number of extensions: 279363
Number of successful extensions: 488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)