Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_M02
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46420.1 68416.m05032 leucine-rich repeat family protein / pr...    28   5.1  
At5g64560.2 68418.m08114 magnesium transporter CorA-like family ...    28   6.7  
At5g64560.1 68418.m08113 magnesium transporter CorA-like family ...    28   6.7  
At5g34960.1 68418.m04125 hypothetical protein includes At5g34960...    27   8.9  

>At3g46420.1 68416.m05032 leucine-rich repeat family protein /
           protein kinase family protein contains leucine rich
           repeat (LRR) domains, INTERPRO:IPR001611; contains
           serine/threonine protein kinases active-site signature,
           Prosite:PS00108
          Length = 838

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 166 PKAHAYYIVESRWVRTYVH*Y 228
           P A+A YI +S W++TYV  Y
Sbjct: 179 PLANATYITQSGWLKTYVRVY 199


>At5g64560.2 68418.m08114 magnesium transporter CorA-like family
           protein (MRS2-2) weak similarity to SP|Q01926 RNA
           splicing protein MRS2, mitochondrial precursor
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01544: CorA-like Mg2+ transporter protein
          Length = 378

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 585 QTDNLAPNEPLCLKLHMTIDTVCLTHYSLIYGTF 686
           Q DN   N+ + L+L ++  TVCL+ YSL+ G F
Sbjct: 316 QLDNHR-NQLIQLELVLSSGTVCLSMYSLVAGIF 348


>At5g64560.1 68418.m08113 magnesium transporter CorA-like family
           protein (MRS2-2) weak similarity to SP|Q01926 RNA
           splicing protein MRS2, mitochondrial precursor
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01544: CorA-like Mg2+ transporter protein
          Length = 394

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 585 QTDNLAPNEPLCLKLHMTIDTVCLTHYSLIYGTF 686
           Q DN   N+ + L+L ++  TVCL+ YSL+ G F
Sbjct: 316 QLDNHR-NQLIQLELVLSSGTVCLSMYSLVAGIF 348


>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
           At2g14450, At1g35920
          Length = 1033

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 352 KGLFSFFVPPXFLGVL 305
           KG+FSFFVP  FL +L
Sbjct: 159 KGIFSFFVPIPFLSIL 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,373,607
Number of Sequences: 28952
Number of extensions: 201581
Number of successful extensions: 319
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)