Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L23
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    27   1.7  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    27   2.9  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    26   5.1  
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    25   6.7  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    25   8.9  

>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 45  KKVLSLFQDVDQVNVMMNTTKLERTMTLKPTSITTPIRKLLKN 173
           +K+LSL ++ D VN+  N +KL +    K       I + LKN
Sbjct: 286 EKILSLQRETDDVNIAQNKSKLIQRDLQKVLDYKLGILQSLKN 328


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 200 DNRFCTISRILQQLSYWCSYRCW 132
           D +  T++++ + LS W  YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 98  YYKIGKDYDVEANIDNYTNKKAVE 169
           YYK+ K Y  +AN D     K VE
Sbjct: 106 YYKLAKQYHPDANPDKAAQDKFVE 129


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 29  VCGAPEKGFIPFPRC--RPS*RDDEYYKIGKDYDVEANID 142
           +CG+ +K F  FP+C    +   D Y+++  D+  E +I+
Sbjct: 256 LCGSAKKKFHSFPKCTHNDTCLGDGYFQVIADFLAENDIN 295


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 128 EANIDNYTNKKAVEEFLKLYRIGYLPK 208
           E  + N+T ++A+EE  KL     LPK
Sbjct: 270 EERLTNFTEEEAIEECKKLNTKSMLPK 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,330
Number of Sequences: 5004
Number of extensions: 50985
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)