Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L23
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0177 - 13841148-13841267,13841569-13841645,13842710-138428...    31   0.98 
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43...    29   2.3  
11_01_0052 - 396822-396965,397332-397541,397686-397815,397956-39...    29   4.0  
10_08_0880 + 21267034-21267537                                         28   5.2  
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269...    28   5.2  

>10_07_0177 -
           13841148-13841267,13841569-13841645,13842710-13842860,
           13842942-13843056,13843145-13843236,13843317-13843370,
           13843849-13843935,13844023-13844109,13844191-13844274,
           13844359-13844445,13844793-13845549,13846491-13846648
          Length = 622

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 285 KTLKPSTRVPAFAPCAPNMTGHVPCYALLIFAGLSQAQMN 404
           + + P+T  P F  C  + TG V      + AGL+  +MN
Sbjct: 529 RRMDPATNEPLFTNCTRDFTGTVDYIFYTVVAGLTNGEMN 568


>12_01_0053 -
           438527-438670,439038-439247,439401-439530,439672-439842,
           440233-440355,440439-440543,440656-441332,441498-441604,
           441970-442177,442178-442245,444209-444411,444580-444663,
           444780-445109,445238-445438,445667-445744,446236-446306
          Length = 969

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/89 (22%), Positives = 39/89 (43%)
 Frame = -1

Query: 310 TLVEGFKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGVVIDVG 131
           T++  F  F  V  +   + L    +++D ++     +TDS+  +       + VVI + 
Sbjct: 426 TILLNFHAFVFVAILRTFDRLASLYVLDDPKMSSNSTLTDSLHERTIVFGLKLWVVIGIS 485

Query: 130 FNVIVLSNFVVFIITLTWSTSWKRDKTFF 44
               +L   ++ I+ LT  T  KR +  F
Sbjct: 486 VGASLLGVLLILIVCLTIQTWIKRSRRTF 514


>11_01_0052 -
           396822-396965,397332-397541,397686-397815,397956-398126,
           398723-398827,398940-399613,399659-399688,399756-399932
          Length = 546

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/69 (23%), Positives = 33/69 (47%)
 Frame = -1

Query: 250 LFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGVVIDVGFNVIVLSNFVVFIITLTWST 71
           +F  ++++D ++     +TDS+  +       + VVI +     +L   ++ I+ LT  T
Sbjct: 65  MFEGMVLDDPKMSSNSTLTDSLHERTIVFGLKLWVVIGISVGASLLGVLLILIVCLTLQT 124

Query: 70  SWKRDKTFF 44
             KR +  F
Sbjct: 125 WIKRSRRTF 133


>10_08_0880 + 21267034-21267537
          Length = 167

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 255 LLFSTCSTMLKTLKPSTRVPAFAPCAPNMTGHV 353
           L    C+ +L  +K    VPA  PC P + G V
Sbjct: 90  LKLGVCANVLDLIKAKAGVPATEPCCPLLNGLV 122


>05_04_0272 +
           19624898-19625071,19625909-19626370,19626471-19626905,
           19626992-19627237,19627318-19628085,19628245-19628417,
           19629337-19629440,19629525-19630127,19630210-19630214
          Length = 989

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 334 GAHGAKAGTLVEGFKVFSIVEQVEKSNSLFP*LLVE 227
           GAHG+KAG  + GF  +S + +++  N L   LL+E
Sbjct: 772 GAHGSKAGFPISGF--YSDMRKMQNMNGLEGQLLLE 805


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,865,416
Number of Sequences: 37544
Number of extensions: 301109
Number of successful extensions: 667
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)