Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L23
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_21895| Best HMM Match : E1-E2_ATPase (HMM E-Value=0.008)            28   5.4  
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_40157| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        27   9.4  
SB_44204| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1276

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 252  LLLFSTCSTMLKTLKPSTRVPAFA-PCAPNMTGHVPCYALLIFA 380
            L L   C  +L    P   V + A PC P +   VPCYALL  A
Sbjct: 1110 LSLAMPCCPLLCLAVPCYVVLSLAMPCCPLLCLAVPCYALLSLA 1153


>SB_21895| Best HMM Match : E1-E2_ATPase (HMM E-Value=0.008)
          Length = 659

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +2

Query: 509 FKDXIRS*NGNERYSFTNGTALLT---YGHRKTRKSSMC 616
           FKD I S  G++R++  NGT ++    YGH K     +C
Sbjct: 240 FKDEIYSLVGHKRHTLFNGTKVIQTRYYGHAKVLAVVIC 278


>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 512  KDXIRS*NGNERYSFTNGTALLTYGHRKTRKS 607
            K+ I+S   ++RY   +G   L YGH KT K+
Sbjct: 2260 KNVIKSNIKHKRYILKDGIKSLAYGHHKTPKT 2291


>SB_40157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 9   RQKMSTMFVERQKKVLSLFQDVDQVNVMMNTTKLERTMTLKPTSIT 146
           RQ+   ++VE  +K++ LF  +D VN    T    R M   P SIT
Sbjct: 32  RQRNFVLYVEALEKLVPLFFVLDHVNYARWTPIHIRDMKSLPQSIT 77


>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 383 TCKYK*CVARNVSRHVRCTRSESGHSC 303
           TC  + C A N++RH+ C   E  ++C
Sbjct: 567 TCDKRFCSAVNLNRHMLCHNQERPYAC 593


>SB_44204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -1

Query: 196 TDSVQFQEFFNSFLIGVVIDVGFN---VIVLSNFVVFIITLTWSTSWK 62
           TD+     FF   + G+ ID+ FN   VI+ +  +   I   W   W+
Sbjct: 428 TDTSVLMNFFTRSITGLAIDLVFNTLSVIIQTRVMNVAIIRVWRKKWR 475


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,867,275
Number of Sequences: 59808
Number of extensions: 372856
Number of successful extensions: 966
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)