Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L23
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    29   3.6  
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    29   3.6  
U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF040651-1|AAB95013.4|  691|Caenorhabditis elegans Nhl (ring fin...    28   4.7  
AF068721-2|AAC19262.1|  396|Caenorhabditis elegans Hypothetical ...    28   6.2  

>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = +2

Query: 77  PS*RDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAI 256
           P    D YY + + + V      +TN   V+E +K Y     P + ++S       EEAI
Sbjct: 60  PESTHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAI 107

Query: 257 ALFHLFYYAKD 289
           A FH +Y  K+
Sbjct: 108 AYFHKYYEGKE 118


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = +2

Query: 77  PS*RDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAI 256
           P    D YY + + + V      +TN   V+E +K Y     P + ++S       EEAI
Sbjct: 60  PESTHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAI 107

Query: 257 ALFHLFYYAKD 289
           A FH +Y  K+
Sbjct: 108 AYFHKYYEGKE 118


>U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical
           protein ZC513.3 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 224 WRTHSTWEDN-RFCTISRILQQLSYWCSYRC 135
           WRT +  E + +F  +SRIL+Q + W S  C
Sbjct: 542 WRTFAIREKSEKFPNVSRILRQKTSWVSKNC 572


>AF040651-1|AAB95013.4|  691|Caenorhabditis elegans Nhl (ring finger
           b-box coiled coil)domain containing protein 3 protein.
          Length = 691

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 261 FSTCSTMLKTLKPSTRVPAFAPCA 332
           F TCST L T   +TR P   PC+
Sbjct: 22  FLTCSTCLYTYDGNTRKPKLLPCS 45


>AF068721-2|AAC19262.1|  396|Caenorhabditis elegans Hypothetical
           protein ZK1055.4 protein.
          Length = 396

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 206 KYYEFSIFYQKLREEAIALFHLFYYAKDFETFYKSARFRSVC 331
           KYY+ +I   K   +     ++    KDFE F K   FR  C
Sbjct: 101 KYYDIAISTVKCYAKIQGYHYILAVEKDFECFQKDQFFRRHC 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,033,477
Number of Sequences: 27780
Number of extensions: 280440
Number of successful extensions: 720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)