Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L23
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09600.1 68418.m01111 succinate dehydrogenase cytochrome b su...    30   1.4  
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH...    27   7.7  
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH...    27   7.7  
At4g28710.1 68417.m04106 myosin heavy chain, putative similar to...    27   7.7  
At4g09750.1 68417.m01601 short-chain dehydrogenase/reductase (SD...    27   7.7  
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    27   7.7  

>At5g09600.1 68418.m01111 succinate dehydrogenase cytochrome b
           subunit family protein similar to succinate
           dehydrogenase subunit 3 [Gossypium hirsutum]
           GI:14861484; contains Pfam profile PF01127: Succinate
           dehydrogenase cytochrome b subunit
          Length = 213

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 186 TESVIFXXXXXXXXXXXXXGKRLLLFSTCSTMLKTLKPSTRVPAFAPCAPNMTGHVP 356
           TE+ I              G    LFST S  +KT +   ++ +F P +P+++ + P
Sbjct: 80  TEAAIVGAQLTRSFRALDVGTSKRLFSTISGDIKTTQEEPKIKSFRPLSPHLSVYQP 136


>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 742

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 217 LIVLGKITDSVQFQEFFNSFLIGVVI 140
           ++V G ITD++     F +F++GV+I
Sbjct: 204 VLVCGFITDAIGIHSMFGAFVVGVLI 229


>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 810

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 217 LIVLGKITDSVQFQEFFNSFLIGVVI 140
           ++V G ITD++     F +F++GV+I
Sbjct: 272 VLVCGFITDAIGIHSMFGAFVVGVLI 297


>At4g28710.1 68417.m04106 myosin heavy chain, putative similar to
           myosin [Arabidopsis thaliana] gi|499047|emb|CAA84066.
          Length = 899

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 211 VLGKITDSVQFQEFFNSFLIGVVIDVGFNVIVLSNFVVFIITLT 80
           ++ KI DS+  Q+  + +LIGV+   GF     ++F  F I LT
Sbjct: 411 IVNKINDSIG-QDPDSEYLIGVLDIYGFESFKTNSFEQFCINLT 453


>At4g09750.1 68417.m01601 short-chain dehydrogenase/reductase (SDR)
           family protein similar to androgen-regulated short-chain
           dehydrogenase/reductase 1 GI:9622124 from [Homo sapiens]
          Length = 322

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 365 TTYICRFIPSANEYFNGKLRFLNQGV-TVY*XXLXP-DKFLSG 487
           T  + + +PS +E F GKLR   QG  T+    L P +K +SG
Sbjct: 240 TPGVAKSLPSFSESFAGKLRTSEQGADTIVWLALQPKEKLVSG 282


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
            identical to ubiquitin-protein ligase 1 [Arabidopsis
            thaliana] GI:7108521; E3, HECT-domain protein family;
            similar to GI:7108521, GB:AAF36454 from [Arabidopsis
            thaliana]
          Length = 3891

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 273  STMLKTLKPSTRVPAFAPCAPNMTGHVPCYALLIFAGLSQAQMNTS 410
            S +L  + P    P F  C PN    V      I++G+  A+ N S
Sbjct: 1459 SQVLDVILPIWNHPMFPDCNPNFVASVTSLVTHIYSGVVDARENRS 1504


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,167,534
Number of Sequences: 28952
Number of extensions: 257200
Number of successful extensions: 654
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)