Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_L22
(497 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 170 5e-43
SB_39426| Best HMM Match : C4 (HMM E-Value=0) 164 4e-41
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 7e-25
SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32) 48 4e-06
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.099
SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2) 31 0.40
SB_10559| Best HMM Match : HAT (HMM E-Value=2) 31 0.70
SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.92
SB_42074| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_52937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_43056| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_26852| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_43233| Best HMM Match : Caudal_act (HMM E-Value=5.7) 29 1.6
SB_36452| Best HMM Match : Collagen (HMM E-Value=0.35) 29 1.6
SB_36287| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_14703| Best HMM Match : Borrelia_orfA (HMM E-Value=0.14) 29 1.6
SB_10009| Best HMM Match : CPL (HMM E-Value=2.5) 29 1.6
SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_23066| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 170 bits (414), Expect = 5e-43
Identities = 73/129 (56%), Positives = 93/129 (72%)
Frame = +1
Query: 40 IVKYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLAS 219
++ YI RC VCEV S+V+AVHSQ++ +P CP GWS LW GYSF+MHT L+S
Sbjct: 1711 LMPYIGRCAVCEVSSHVMAVHSQSITVPSCPSGWSPLWQGYSFLMHTSAGNDGSGQLLSS 1770
Query: 220 PGSCLEDFRAIPFIECNGEGGTCHHFANKLSFWLTTIEDSQQFAMPERQTLKSGRLLERV 399
PGSCLEDFRA PFIEC+G GTCH++ + SFWL T++ ++QF +P +TLK+G L ERV
Sbjct: 1771 PGSCLEDFRAHPFIECHGR-GTCHYYGSTYSFWLATVDQNKQFRIPRPETLKAGNLRERV 1829
Query: 400 SGCAVCIXN 426
S C VC N
Sbjct: 1830 SRCQVCQKN 1838
Score = 88.2 bits (209), Expect = 3e-18
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +1
Query: 4 QPIPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGYSFVM 174
+PIPMMPV+ + YI RC VCEV S+V+AVHSQ++ +P CP GWS LW GYSF+M
Sbjct: 1656 EPIPMMPVQETNVQPYIGRCAVCEVSSHVMAVHSQSITVPSCPSGWSPLWQGYSFLM 1712
Score = 62.5 bits (145), Expect = 2e-10
Identities = 37/106 (34%), Positives = 51/106 (48%)
Frame = +1
Query: 100 HSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRAIPFIECNGEG 279
HSQT+ +P CP LW GYS +++ L SPGSC++ F +PF+ CN
Sbjct: 1580 HSQTVRVPRCPEDRPPLWEGYS-LLYVQGNERAHGQDLGSPGSCIQRFSTMPFLFCNINN 1638
Query: 280 GTCHHFANKLSFWLTTIEDSQQFAMPERQTLKSGRLLERVSGCAVC 417
N SFWL+T E MP ++T + + CAVC
Sbjct: 1639 VCNLASRNDYSFWLSTPEPIPM--MPVQET----NVQPYIGRCAVC 1678
>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
Length = 188
Score = 164 bits (398), Expect = 4e-41
Identities = 74/137 (54%), Positives = 91/137 (66%)
Frame = +1
Query: 10 IPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGYSFVMHTXXX 189
+PMMP++ + + YISRC VCE V+AVHSQ+ +P CP GWS LW GYSF+MHT
Sbjct: 10 VPMMPIQASAVEPYISRCTVCESHGPVMAVHSQSTTLPTCPGGWSSLWSGYSFLMHTGAG 69
Query: 190 XXXXXXXLASPGSCLEDFRAIPFIECNGEGGTCHHFANKLSFWLTTIEDSQQFAMPERQT 369
L S GSCLE FR PFIEC+G GTCH++ANK SFWL T+ + F + +T
Sbjct: 70 GSGTGQSLGSSGSCLESFRPNPFIECHGR-GTCHYYANKYSFWLATV--NTPFQTQQSET 126
Query: 370 LKSGRLLERVSGCAVCI 420
LK+G LL RVS C VCI
Sbjct: 127 LKAGNLLSRVSRCQVCI 143
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 110 bits (264), Expect = 7e-25
Identities = 59/137 (43%), Positives = 75/137 (54%)
Frame = +1
Query: 10 IPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGYSFVMHTXXX 189
+PMMP++ + + YISRC VCE V+AVHS+ + HT
Sbjct: 1544 VPMMPIQASAVEPYISRCTVCESHGPVMAVHSK-----------------HDLTNHTGAG 1586
Query: 190 XXXXXXXLASPGSCLEDFRAIPFIECNGEGGTCHHFANKLSFWLTTIEDSQQFAMPERQT 369
L S GSCLE FR PF EC+G GTCH++ANK SFWL T+ + F + +T
Sbjct: 1587 GSGTGQSLGSSGSCLESFRPNPFTECHGR-GTCHYYANKYSFWLATV--NTPFQTQQSET 1643
Query: 370 LKSGRLLERVSGCAVCI 420
LK+G LL RVS C VCI
Sbjct: 1644 LKAGNLLSRVSRCQVCI 1660
Score = 61.7 bits (143), Expect = 3e-10
Identities = 36/109 (33%), Positives = 54/109 (49%)
Frame = +1
Query: 91 IAVHSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRAIPFIECN 270
I HSQT P CP + +LW GYS +++ L GSCL+ F +P++ CN
Sbjct: 1463 IVKHSQTTTPPECPPTYDKLWDGYS-LLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLYCN 1521
Query: 271 GEGGTCHHFANKLSFWLTTIEDSQQFAMPERQTLKSGRLLERVSGCAVC 417
G + N S+WL+T D+Q MP +++ + +S C VC
Sbjct: 1522 IFGKCNYASRNDYSYWLST--DNQVPMMP----IQASAVEPYISRCTVC 1564
>SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32)
Length = 176
Score = 48.0 bits (109), Expect = 4e-06
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +1
Query: 91 IAVHSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRAIPFIECN 270
I HSQT P CP + +LW GYS +++ L GSCL+ F +P++ CN
Sbjct: 67 IVKHSQTTTPPECPPTYDKLWDGYS-LLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLYCN 125
>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 33.5 bits (73), Expect = 0.099
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +1
Query: 31 GNEIVKYISRCVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMH 177
GN + + C VC VPS S L IP CP GWS + GY H
Sbjct: 55 GNSLQDHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTEH 101
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 61 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 162
C VC VPS S L IP CP GWS + GY
Sbjct: 425 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 456
>SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2)
Length = 288
Score = 31.5 bits (68), Expect = 0.40
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +1
Query: 61 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMH 177
C VC VPS S L IP CP GWS + GY H
Sbjct: 151 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTSH 187
>SB_10559| Best HMM Match : HAT (HMM E-Value=2)
Length = 123
Score = 30.7 bits (66), Expect = 0.70
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 177 MHDKTVTNPQFTPSYWATWN 118
MH +++P+ TPS+W TW+
Sbjct: 23 MHASQISDPRRTPSFWKTWH 42
>SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 30.3 bits (65), Expect = 0.92
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 61 CVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGY 162
C VC VPS + + CP GWS + GY
Sbjct: 112 CAVCYVPSR--STQLMIPSVARCPTGWSREYYGY 143
>SB_42074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +1
Query: 31 GNEIVKYISRCVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 162
G + + C VC VPS S L IP CP GWS + GY
Sbjct: 79 GKSLQNHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 120
>SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 61 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 162
C VC VPS S L IP CP GWS + GY
Sbjct: 77 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 108
>SB_52937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 61 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 162
C VC VPS S L IP CP GWS + GY
Sbjct: 125 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 156
>SB_43056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 61 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 162
C VC VPS S L IP CP GWS + GY
Sbjct: 53 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 84
>SB_26852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 61 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 162
C VC VPS S L IP CP GWS + GY
Sbjct: 198 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 229
>SB_43233| Best HMM Match : Caudal_act (HMM E-Value=5.7)
Length = 118
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 61 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 162
C VC VPS S L IP CP GWS + GY
Sbjct: 65 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 96
>SB_36452| Best HMM Match : Collagen (HMM E-Value=0.35)
Length = 374
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 61 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 162
C VC VPS S L IP CP GWS + GY
Sbjct: 99 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 130
>SB_36287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 61 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 162
C VC VPS S L IP CP GWS + GY
Sbjct: 65 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 96
>SB_14703| Best HMM Match : Borrelia_orfA (HMM E-Value=0.14)
Length = 558
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 61 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 162
C VC VPS S L IP CP GWS + GY
Sbjct: 84 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 115
>SB_10009| Best HMM Match : CPL (HMM E-Value=2.5)
Length = 321
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +1
Query: 61 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMH 177
C VC V S S L IPG CP GWS + GY H
Sbjct: 225 CAVCYVSSR-----SAKLLIPGTNVCPAGWSREYHGYLMTAH 261
>SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 61 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 162
C VC VPS S L IP CP GWS + GY
Sbjct: 82 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 113
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 61 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 162
C VC VPS S L IP CP GWS + GY
Sbjct: 701 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 732
>SB_23066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 898
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -3
Query: 453 TLSLFALCGVXDTNCTSGYTF*ETSRLKCL--SLWHSKL 343
T +F+ D +C+ GYT SR+ CL W K+
Sbjct: 725 TFGIFSFRDSVDFSCSQGYTLTGRSRIFCLEDGTWSDKM 763
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,271,535
Number of Sequences: 59808
Number of extensions: 333607
Number of successful extensions: 732
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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