Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L22
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12990.1 68414.m01508 glycosyl transferase family 17 protein ...    30   0.75 
At3g52490.1 68416.m05772 heat shock protein-related contains sim...    28   3.0  
At1g60380.1 68414.m06798 apical meristem formation protein-relat...    27   7.0  

>At1g12990.1 68414.m01508 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327]; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 392

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 353 IANCWLSSMVVSQKLSLFAK*-WQVPPSPLHSINGIARKSSKQE 225
           +  C L+  V  QK+S F +  W+ PP P H I     +++  E
Sbjct: 57  VPTCVLAGYVHGQKISYFLRPLWESPPKPFHDIPHYYHENASME 100


>At3g52490.1 68416.m05772 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 815

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 134 TGQPGMSNVWLWTAITLDGTSHTTHLEM 51
           +GQP + ++W  T +T+  TS++  L +
Sbjct: 349 SGQPSLESLWCLTTLTIPATSNSLRLSL 376


>At1g60380.1 68414.m06798 apical meristem formation protein-related
           contains similarity to CUC1 [Arabidopsis thaliana]
           gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
           gi|1279640|emb|CAA63101
          Length = 318

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 7   PIPMMPVEGNEIVKYISRCVVCEVPSNVIAVH 102
           P+ +M  EG +   Y++  V C  PS ++ VH
Sbjct: 183 PVTIMISEGKDWPSYVTNNVYCLHPSELVNVH 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,226,756
Number of Sequences: 28952
Number of extensions: 225412
Number of successful extensions: 473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)