Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L21
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   4.8  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    26   4.8  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   8.5  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   8.5  

>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -3

Query: 246 PHPFTHCNSVATSLLPDEA----LMVEYWAKRWVGREPVGQASA-FSP 118
           P PF H N + T  L ++A     + ++ + R +    VGQ+S+ FSP
Sbjct: 102 PKPFLHTNRLGTGSLIEDAPPTQSIYDFSSSRQINALNVGQSSSPFSP 149


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 213 TSLLPDEALMVEYWAKRWVGRE 148
           TS+  DE    EYW KR+V RE
Sbjct: 319 TSMQLDEDYTDEYWEKRYVIRE 340


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 6/26 (23%), Positives = 14/26 (53%)
 Frame = -3

Query: 273 VSHSCGDIPPHPFTHCNSVATSLLPD 196
           + ++C ++ PH  ++C   A   + D
Sbjct: 5   IQNNCSEVDPHVLSYCTGYANDAIKD 30


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 21  WDGDDTGLRQHCTASP-LRQAHRASSVLRPN 110
           W+ DD  L++H T SP    A+  SS   PN
Sbjct: 78  WEDDDDPLKEHITHSPSCPWAYILSSKNNPN 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,254
Number of Sequences: 5004
Number of extensions: 56558
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)