Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L21
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0270 + 16378878-16380566                                         30   1.2  
01_06_1728 + 39480252-39480450,39480552-39481224,39481554-394816...    30   1.6  
10_08_0351 - 17069974-17070232,17070470-17071751,17071908-170719...    29   3.8  
04_01_0014 - 231228-233179,233522-233714                               28   5.0  
01_05_0305 + 20659199-20660026,20660147-20660179                       28   5.0  
09_06_0302 - 22144271-22144543,22144946-22145083,22146004-221462...    28   6.6  
01_06_0343 + 28566513-28566644,28566791-28568494,28569178-285692...    28   6.6  
07_03_0183 - 14822973-14823139,14823232-14823627,14823861-148240...    27   8.7  
05_05_0208 + 23275931-23275996,23276084-23276196,23276279-232764...    27   8.7  

>10_08_0270 + 16378878-16380566
          Length = 562

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +1

Query: 4   EPPAAFGMGTIRDCVSIAPHRPCDKPTGPRLYLGPMGMGGECRCLTHWLSPHPPLRPILY 183
           E P  F    +++CV++ P +   K T    +  PM  GG     T W +       I++
Sbjct: 138 ELPPRFNTDMVKNCVALFPWKDMCKFTANGGFGPPMSGGGGMFQETGWYNSDKYTVDIIF 197

Query: 184 HESFVREE 207
           HE   R E
Sbjct: 198 HERMRRYE 205


>01_06_1728 +
           39480252-39480450,39480552-39481224,39481554-39481638,
           39481731-39481820,39481953-39482026,39482421-39482505,
           39482582-39482668,39482797-39482927,39483642-39483723,
           39483810-39483857,39484793-39484912
          Length = 557

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +1

Query: 136 LTHWLSPHPPLRPILYHESFVREERGGNRVTMGKGVRRDVSARV*DSPGREASG 297
           L+  L  +PP  P   H  F+R  R  +  ++   + R++S ++ D P    +G
Sbjct: 90  LSRRLHSNPPSFPCGLHAVFLRSGRDPSEASVANRIEREISTQLVDLPDASTAG 143


>10_08_0351 -
           17069974-17070232,17070470-17071751,17071908-17071969,
           17072109-17072181,17072399-17072466,17073023-17073207,
           17073311-17073452,17073665-17073720,17074003-17074056,
           17074679-17074782,17075012-17075112,17075717-17075790,
           17076482-17076560,17076668-17076744,17076875-17076931,
           17077058-17077168,17077254-17077334
          Length = 954

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 149 SLPTHLFAQYSTMRASSGRREVATELQWVKGCGGMSPH 262
           SLPT +F  Y+ +     R +V+  + W    GG S H
Sbjct: 219 SLPTSVFV-YTLVNTGKDRAKVSLLMTWANSIGGFSHH 255


>04_01_0014 - 231228-233179,233522-233714
          Length = 714

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 146 GSLPTHLFAQYSTMRASSGRREVATELQWVKGCGGMSPHECETRPDVK 289
           GSL THLF   +T+   S R ++A  +         S HEC    D+K
Sbjct: 494 GSLDTHLFQSNATILTWSTRYQIAIGVARGLSYLHQSCHECIIHCDIK 541


>01_05_0305 + 20659199-20660026,20660147-20660179
          Length = 286

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = -3

Query: 357 IPVSSPSQMRRTAPGALVVTSGRFTSGRVSHSC--GDIPPHPFTHCNSVATSLLPDEALM 184
           +P+  P +++  A  A    S   +   V H    G+ PP P T   S A+      A+ 
Sbjct: 120 VPLKLPPRLQAAAAAAAAADSS-LSPNTVLHGPYGGNKPPRPLTRSGSTASHRRKPSAVG 178

Query: 183 VEYWAK 166
           V  W K
Sbjct: 179 VSLWRK 184


>09_06_0302 -
           22144271-22144543,22144946-22145083,22146004-22146278,
           22146486-22146957
          Length = 385

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 297 SGRFTSGRVSHSCGDIPPHPFTHCNSVATSLLP 199
           +G+FT GR     GD+     T+C   A   +P
Sbjct: 105 AGKFTGGRTGSIAGDLRDGAVTYCKPPAVGYVP 137


>01_06_0343 +
           28566513-28566644,28566791-28568494,28569178-28569240,
           28569241-28569310,28570438-28570715,28571886-28571963,
           28573017-28573715,28573811-28573913,28574096-28574196,
           28574272-28574446,28574843-28575013,28575534-28575634,
           28575706-28575771
          Length = 1246

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 336 VMGTIRESKIKT*QI-EIVTLVMKDTCDVTVYVFRFGVEQNRTSPPSCNINSITLYVR 506
           V+G  RE    T Q+ +  + V  DTC+V+   ++   +QN   P S  ++   L VR
Sbjct: 620 VLGDTREVSCDTYQVSDDFSHVSSDTCEVSDDTYQISDDQNILDPISSLLSVFLLSVR 677


>07_03_0183 -
           14822973-14823139,14823232-14823627,14823861-14824005,
           14824174-14824380
          Length = 304

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/84 (26%), Positives = 27/84 (32%)
 Frame = +2

Query: 113 GWGENADA*PTGSLPTHLFAQYSTMRASSGRREVATELQWVKGCGGMSPHECETRPDVKR 292
           GW    DA      P H     S   AS  RR     +QW  G     P       D+ +
Sbjct: 199 GWEPTGDAPGWTQAPRHSIGVSSWASASEDRRHAPHNIQW--GDMSNQPPRSSDGRDLIQ 256

Query: 293 PEVTTKAPGAVRRICDGDDTGIQN 364
           P  T       ++  D   T I N
Sbjct: 257 PRGTHYTMQEWQQTADAQFTNINN 280


>05_05_0208 +
           23275931-23275996,23276084-23276196,23276279-23276459,
           23276590-23276674,23276974-23277104,23277194-23277432,
           23277512-23277748,23277838-23277992,23278039-23278271,
           23278359-23278521,23278613-23278818,23278960-23279019,
           23279106-23279198,23279406-23279569,23280070-23280138,
           23280241-23280382,23280490-23280546
          Length = 797

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 349 IVPITNAADGP--GGFSGYFRTLHVRASLTLVRRHPSAPLY 233
           IV +  A  G   G  SG FRT+ +  +++L+ +  +AP+Y
Sbjct: 252 IVGVYKALPGKSKGSVSGVFRTVLIANNVSLMNKEANAPVY 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,615,026
Number of Sequences: 37544
Number of extensions: 487473
Number of successful extensions: 1417
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)