Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L21
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)                   31   0.54 
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_44507| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_1752| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_45398| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_34673| Best HMM Match : UK (HMM E-Value=0.6)                        28   6.6  
SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)                   27   8.8  
SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)                   27   8.8  
SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9)                      27   8.8  

>SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)
          Length = 636

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 339 SQMRRTAPGALVVTSGRFTSGRVSHSCGDIPPHPFT 232
           +Q+RR + G    T+   TS R +H+  DIP  PFT
Sbjct: 577 NQLRRFSKGPYATTTA--TSSRTAHALTDIPKRPFT 610


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +2

Query: 236 KGCGGMSPHEC-ETRPDVKRPEVTTKAPGAVRRICDGDDTGIQNKDLTNRNSY-SCNEGH 409
           K C      +C  TRP   +   TTKAP      C G   G +  D  N N +  C+ G+
Sbjct: 484 KHCDNPENVQCGPTRPPTPKVPPTTKAPFTKSPFCVGKQNG-KYADANNCNGFVMCSNGY 542

Query: 410 V 412
           +
Sbjct: 543 I 543


>SB_44507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 643

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 422 CDVTRVLHYKSNYFYLLGLYFGFPYRPHHKC-GGRPRGL 309
           C  T+ + YK   F  L + FG P +P  +  GGR  GL
Sbjct: 353 CPFTKKITYKKAAFERLCIEFGLPRKPDFRWKGGRNHGL 391


>SB_1752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 375 VRSLFWIPVSSPSQMRRTAPGALVVTSGRFTSGRVSHS 262
           +RS+F   V+SP+ + +  P     TS    SGR SH+
Sbjct: 248 LRSVFLREVTSPNSICQRNPNPFSTTSDMMNSGRESHA 285


>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 29/94 (30%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
 Frame = +1

Query: 49   SIAPHRPCDKPTGPRLYLGPMGMGGECRCLTHWLSPHPPLRPILYHESFVREERGGNRVT 228
            +  P R   K   P LY+   G   + RCL+   S  PP  P  YH S  R       V 
Sbjct: 726  AFVPRRSRSKQLRP-LYIDDSGFLND-RCLSSKTSMRPPETPFSYHSSKSRRSVSLRSVV 783

Query: 229  --MGKGVRRDVSARV*DSPGREASGSNH*SPRGR 324
                    R +S+R     G EAS S + S   R
Sbjct: 784  TEYSSYPSRAMSSRFSSRRGSEASLSLYTSSERR 817


>SB_45398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 136 GIGILPPSPLGLSTDEARWACRRGDAVQC*RNPVS 32
           GI I P SPL   TD+A+ A R+  + Q    P S
Sbjct: 360 GIRIKPSSPLNALTDDAQVALRQSPSTQKRLKPAS 394


>SB_34673| Best HMM Match : UK (HMM E-Value=0.6)
          Length = 641

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 260 HECETRPDVKRPEVTTKAPGAVRRICDGDDTGIQNKDLTNR 382
           HE    PD  RP+ TT  PG  + + +  D   +  D+++R
Sbjct: 206 HEATDEPD--RPQETTDVPGRSQEVTNAPDRQQEANDVSDR 244


>SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)
          Length = 1056

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = +1

Query: 127 CRCLTHWLSPHPPLRPILYHESFVREERGGN 219
           CR  TH L PH P R     E    EER GN
Sbjct: 678 CRLRTHVL-PHRPTRVYCKKEDLTPEERVGN 707


>SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)
          Length = 667

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 362 FGFPYRPHHKCGGRPRGL 309
           F + +RPH   GGRP GL
Sbjct: 219 FEYAFRPHESFGGRPFGL 236


>SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9)
          Length = 566

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 398 YKSNYFYLLGLYFGFPYRPHHKC-GGRPRGL 309
           YK   F  L + FG P +PH +  GGR  GL
Sbjct: 422 YKKAAFERLCIEFGLPRKPHFRWKGGRNHGL 452


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,287,523
Number of Sequences: 59808
Number of extensions: 495222
Number of successful extensions: 1940
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1935
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)